Atri019443.1
Basic Information
- Insect
- Andrena trimmerana
- Gene Symbol
- -
- Assembly
- GCA_952773225.1
- Location
- OX731551.1:11622575-11630501[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-07 7.1e-05 23.0 0.1 1 32 15 46 15 51 0.97 2 2 5.2 3.6e+03 -1.7 0.0 15 24 246 256 244 257 0.85
Sequence Information
- Coding Sequence
- atggttagaaactacaaaagaaagacggaccgaggaaaATGGTCAGAAGAAGCGATGCAAAACGCATGTAGGGCTGTATTAGAAGGCAGGATGGGATATTACCGAGCAGCAGAAACATATTCAGTCCCACAGACTACAGAAGAAGCAGAGTTAGTCCAATATTTACAAGATATGGAAAGCAGACTTTTCGGACTAACGACTGACGATTTAAAGTCTTTAGCTTACGAATTAGCAACGAGAAACAAGAAAGATCACCCTTTCAACAAAAATAAAGGTAAAGCTGGCAAGGACTGGTTACTCAGTTTTTTAAACCGTCACCCGGAACTAGCCATTAGGAAACCGGAAAACACGTCAGCAGCCAGAGCTGCCGGTTTCAATAAAGCTGCTGTTGACAGATTTTTTACATTATTGGGCGAGATCTATGATAAACACAAATTAACTCCTGATCGTATATTTAATTGTGATGAGACCGGGGTATCAGTTGTTCCGAaaacaaaatgtaaaataatagcCAAAACAGGCCGGAAACAAGTGGGTGCATTGGTTTCTGCTGAGCGAGGTCAAACCATCACAATCGAAATATGCTTCAGCGCAAGTGGTCAGTACATGCCTCCAATGTTAGTGTTCCCTCGTAAGCGGATGAAAGCAGAATTAATGGTAAATGCTTCTCCGGGTGCTTGGGGTGTGTGCAGTGACTCTGGATGGATGACTGCCGAACTATTTTTGCAGTGGTTTGggaaattcatttctttcagCCGAGCATCCAAAGAAAATCCCATTTTATTGCTGCTGGATGGTCACTGCACCCACACAAAAAACTTACAAGTCATTGAGGAAGCAAGAGCAAATGGCGTTATTATATTGTGCTTTCCACCCCACACTACACATCGTCTACAGCCACTCGATGTAGCGTTTATGAAACCTGTAAGCACATATTATGATCAGACAATATCATCGTGGCTTCGTTCAAATCCAGGATGCGTAGTTACTACATTTCAAGTGGCGGAGCTGTTTGGCAAAGCTTTTATTCGGGCAGCGACTATGCAAACTGCCATCAATGGTTTTAAAAAATGCGGGATCTGGCCATTTGATTCCACTGTTTTTACAGAAGTTGATTTTATCGCTTCTATGACAACTGACATTCCTTTAAATGAAAGGACAGATCTTGGTTCAAACATTAATATACAAAGTGAAGCAGCGGAACCGGAACCAATGCAGTCACCCATAGAACAGACCACAGATCAAATGACTGATTCTCAACCTGGTTGTTCATATTGGCCTGATAGGCAGAATAAGACCCCTGAACCAAACAATGATACGTCGTTTCTATTTACTAGCCCACAAGAATTAATTCCCGTGCCAGTCGCACAGCAAAAGTCTCGTGTATCGAGAAAACGTGGGAGAACTGAAATTATAACATCGTCACCATATAAACGTGAACTCGAAATGGTCATCATAAAGAAAAACAAAACAGAAAAGGAGAAAGAagagaaaatgaaattaaaagaatCATCAAACTTGAAACTAAAAGGAAAGGGAAAAGAAAAAGAATCTATGGAAGGATGGATAAGCTGCCAATCGGGCTCGCATTCAGTGTCTGCGTTCGTCCCTTGTAGGTACACACGGGAGCTGGTGCATGTGTGTACCGTAGAGAAGTATTGCGCGGATGTGCAGACGAGGAGAGCCTGGCGAGGCAAGCAGATAGAAGAAACGTGGAGTCTTGCGGCGATCGATAGTCAACCTGGATCCCAGCGCGATAGTGTCGAGCAGAAAGGTTCCGAAATAAAGTGCCGGCAATATAACCTGTTTCTGGGAGGAGGCAGGCTTAAACCTGGGAGCTTAGCCCGCGTATGA
- Protein Sequence
- MVRNYKRKTDRGKWSEEAMQNACRAVLEGRMGYYRAAETYSVPQTTEEAELVQYLQDMESRLFGLTTDDLKSLAYELATRNKKDHPFNKNKGKAGKDWLLSFLNRHPELAIRKPENTSAARAAGFNKAAVDRFFTLLGEIYDKHKLTPDRIFNCDETGVSVVPKTKCKIIAKTGRKQVGALVSAERGQTITIEICFSASGQYMPPMLVFPRKRMKAELMVNASPGAWGVCSDSGWMTAELFLQWFGKFISFSRASKENPILLLLDGHCTHTKNLQVIEEARANGVIILCFPPHTTHRLQPLDVAFMKPVSTYYDQTISSWLRSNPGCVVTTFQVAELFGKAFIRAATMQTAINGFKKCGIWPFDSTVFTEVDFIASMTTDIPLNERTDLGSNINIQSEAAEPEPMQSPIEQTTDQMTDSQPGCSYWPDRQNKTPEPNNDTSFLFTSPQELIPVPVAQQKSRVSRKRGRTEIITSSPYKRELEMVIIKKNKTEKEKEEKMKLKESSNLKLKGKGKEKESMEGWISCQSGSHSVSAFVPCRYTRELVHVCTVEKYCADVQTRRAWRGKQIEETWSLAAIDSQPGSQRDSVEQKGSEIKCRQYNLFLGGGRLKPGSLARV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00087045;
- 90% Identity
- iTF_00088708; iTF_00087866;
- 80% Identity
- -