Amar015358.1
Basic Information
- Insect
- Andrena marginata
- Gene Symbol
- -
- Assembly
- GCA_963932335.1
- Location
- OZ010663.1:20468372-20470262[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.1e-10 3.4e-07 30.1 0.2 1 37 15 52 15 57 0.91
Sequence Information
- Coding Sequence
- atggttagaaactacaaaagaaagacggaccgaggaaaatggtCAGAAGAAGCGATGCGGAACGCAAGTAGGGCTGTATTAGAAGGCAGGATGGGATATTACCGAGCAGCAAAAACATATTCAGTCCCACAGAGTACTCTTGAAAGAAAAGTAAAACTAGCTcgggaaaataataatacttttcaaGAAGTAAAGGTACCTTTGGGGCCAAAGTCTCCGATATTTTCAGCTACAGAAGAAGCAGAGTTGGTCCACTATTTACAAGATATGGAAAGCAGACTTTTCGGACTAACGACTGACGACCTAAAATCTTTAGCTTACCAATTAGCAACCAGAAACAAGAAAGATCACCCTTTCAGCAAAAATAAAGGTAAAGCTGGCAAGGACTGGTTACTCGGTTTTTTAAACCGTCGCCCGGAACTAGCCATTAGGAAACCGGAAAACACGTCAGCAGCTAGAGCTGCCGGTTTCAATAAAGCTGCTGTTGACAGTTTCTTTAAATTATTGGGCGAGATCTATGACAAACACAAATTAACTCCTGATCGTATATTTAATTGTGATGAGACCGGGGTGTCAGTTGTTCcgaaaacaaaatgtaaaataatagccAACACAGGCCGGAAACAAGTGGGTGCATTGGTTTCTGCTGAGCGAGGTCAAACAATCACAATCGAAATATGCTTCAGCGCAAGTGGTCAGTACATGCCTCCAATGTTAGTGTTCCCTCGTAAGCGGATGAAACCAGAATTAATGGTAAATGCTTCTCCGGGTGCTTGGGGTGTGTGCAGTGACTCTGGATGGATGACTGCCGAGCTATTCTTGCAATGGTTTAggaaattcattcctttcagcCGAGCATCCAAAGAAAATCCCATTTTATTGCTGCTGGATGGTCACTGCACCCACACAAAAAACTTAGATGTCATTGAGGAAGCAAGAGCAAACGGCGTTATTATATTGTGCTTTCCACCCCACACTACACATCGTCTACAGCCACTTGATGTAGCGTTTATGAAACCTATAAGCACATATTATGATCAGACAATATCATCGTGGCTTCGTTCAAATCCAAGATGCGTAGTTACTACATTTCAAGTGGCGGAGCTGTTTGGCAAAGCTTTTATTCGGGCAGCGACTATGCAAACTGCCATCAATGGTTTTAAAAAATGCGGGATCTGGCCATTTGATACCACTGTTTTTACAGAAGTTGATTTTATCGCTTCTATGACAACTGACATTCCTTTAAATGAAAGGACAGATCTTGCTTCAAACATTAATATACAAAGTGAAGCAGCGGAACCGGAACCAATGCAGTCACCCATAGAACAGACCACAGATCACATGACTGATTCTCAACCTGGTTGTTCATATTGGCCTGATAGACAGAACAAGACCCCTGAACCAAACAATGATACGTCGTTTCTATTTACTAGCCCACAAGAATTAATTCCCGTGCCAGTCGCACAGCAAAAGTCTCGTGTATCGAGAAAACAGTCAGAAGAAAACACCAAAGAAGATGAAAATCCTTCATGTTTATATTGCGATGGGCTCTATTTAGAATCTATGGAAGGATGGATAAGCtgccaaatatgtggcaaatgggccCATTTGTCCTGTGCCGAcgtaggagatgaggacgatAACGATATACATGTGTGCCTCTTCTGTgaagcaaataaataa
- Protein Sequence
- MVRNYKRKTDRGKWSEEAMRNASRAVLEGRMGYYRAAKTYSVPQSTLERKVKLARENNNTFQEVKVPLGPKSPIFSATEEAELVHYLQDMESRLFGLTTDDLKSLAYQLATRNKKDHPFSKNKGKAGKDWLLGFLNRRPELAIRKPENTSAARAAGFNKAAVDSFFKLLGEIYDKHKLTPDRIFNCDETGVSVVPKTKCKIIANTGRKQVGALVSAERGQTITIEICFSASGQYMPPMLVFPRKRMKPELMVNASPGAWGVCSDSGWMTAELFLQWFRKFIPFSRASKENPILLLLDGHCTHTKNLDVIEEARANGVIILCFPPHTTHRLQPLDVAFMKPISTYYDQTISSWLRSNPRCVVTTFQVAELFGKAFIRAATMQTAINGFKKCGIWPFDTTVFTEVDFIASMTTDIPLNERTDLASNINIQSEAAEPEPMQSPIEQTTDHMTDSQPGCSYWPDRQNKTPEPNNDTSFLFTSPQELIPVPVAQQKSRVSRKQSEENTKEDENPSCLYCDGLYLESMEGWISCQICGKWAHLSCADVGDEDDNDIHVCLFCEANK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00087047; iTF_00087866; iTF_00088708; iTF_00085265; iTF_00085250; iTF_00088724; iTF_00086110;
- 90% Identity
- -
- 80% Identity
- -