Atri016579.2
Basic Information
- Insect
- Andrena trimmerana
- Gene Symbol
- -
- Assembly
- GCA_952773225.1
- Location
- OX731550.1:54622025-54623941[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-10 8e-08 32.4 0.1 1 37 15 52 15 57 0.92 2 2 5.4 3.7e+03 -1.8 0.0 15 24 278 288 276 289 0.85
Sequence Information
- Coding Sequence
- atggttagaaactacaaaagaaagacggaccgaggaaaATGGTCAGAAGAAGCGATGCAAAACGCATGTAGGGCTGTATTAGAAGGCAGGATGGGATATTACCGAGCAGCAGAAACATATTCAGTCCCACAGAGTACGTTGGAAAGAAAAGTAAAACTAGCTCGggaaaataataatacttttcaagaagtaaaggtatctttggGGCCAAAGTCTCCGATATTTTCAGCTACAGAAGAAGCAGAGTTAGTCCAATATTTACAAGATATGGAAAGCAGACTTTTCGGACTAACGACTGACGATTTAAAGTCTTTAGCTTACGAATTAGCAACGAGAAACAAGAAAGATCACCCTTTCAACAAAAATAAAGGTAAAGCTGGCAAGGACTGGTTACTCAGTTTTTTAAACCGTCACCCGGAACTAGCCATTAGGAAACCGGAAAACACGTCAGCAGCCAGAGCTGCCGGTTTCAATAAAGCTGCTGTTGACAGATTTTTTACATTATTGGGCGAGATCTATGATAAACACAAATTAACTCCTGATCGTATATTTAATTGTGATGAGACCGGGGTATCAGTTGTTCCGAaaacaaaatgtaaaataatagcCAAAACAGGCCGGAAACAAGTGGGTGCATTGGTTTCTGCTGAGCGAGGTCAAACCATCACAATCGAAATATGCTTCAGCGCAAGTGGTCAGTACATGCCTCCAATGTTAGTGTTCCCTCGTAAGCGGATGAAAGCAGAATTAATGGTAAATGCTTCTCCGGGTGCTTGGGGTGTGTGCAGTGACTCTGGATGGATGACTGCCGAACTATTTTTGCAGTGGTTTGggaaattcatttctttcagCCGAGCATCCAAAGAAAATCCCATTTTATTGCTGCTGGATGGTCACTGCACCCACACAAAAAACTTACAAGTCATTGAGGAAGCAAGAGCAAATGGCGTTATTATATTGTGCTTTCCACCCCACACTACACATCGTCTACAGCCACTCGATGTAGCGTTTATGAAACCTGTAAGCACATATTATGATCAGACAATATCATCGTGGCTTCGTTCAAATCCAGGATGCGTAGTTACTACATTTCAAGTGGCGGAGCTGTTTGGCAAAGCTTTTATTCGGGCAGCGACTATGCAAACTGCCATCAATGGTTTTAAAAAATGCGGGATCTGGCCATTTGATTCCACTGTTTTTACAGAAGTTGATTTTATCGCTTCTATGACAACTGACATTCCTTTAAATGAAAGGACAGATCTTGGTTCAAACATTAATATACAAAGTGAAGCAGCGGAACCGGAACCAATGCAGTCACCCATAGAACAGACCACAGATCAAATGACTGATTCTCAACCTGGTTGTTCATATTGGCCTGATAGGCAGAATAAGACCCCTGAACCAAACAATGATACGTCGTTTCTATTTACTAGCCCACAAGAATTAATTCCCGTGCCAGTCGCACAGCAAAAGTCTCGTGTATCGAGAAAACGTGGGAGAACTGAAATTATAACATCGTCACCATATAAACGTGAACTCGAAATGGTCATCATAAAGAAAAACAAAACAGAAAAGGAGAAAGAagagaaaatgaaattaaaagaatCATCAAACTTGAAACTAAAAGGAAAGGGAAAAGAAAAAGgtaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaagaagaagTCAGAAGAAAACGCCAAAGAAGACGAAAATCCTTCATGTTTATATTGCGATGGGCTCTATTTAGAATCTATGGAAGGATGGATAAGCTGCCAAGTATGTGGCAAATGGGCCCATTTGTCCTGTGCTGACGTAGGAGATGAGGACGATAACGATATACATGTGTGCCTCTTCTGTgaagcaaataaataa
- Protein Sequence
- MVRNYKRKTDRGKWSEEAMQNACRAVLEGRMGYYRAAETYSVPQSTLERKVKLARENNNTFQEVKVSLGPKSPIFSATEEAELVQYLQDMESRLFGLTTDDLKSLAYELATRNKKDHPFNKNKGKAGKDWLLSFLNRHPELAIRKPENTSAARAAGFNKAAVDRFFTLLGEIYDKHKLTPDRIFNCDETGVSVVPKTKCKIIAKTGRKQVGALVSAERGQTITIEICFSASGQYMPPMLVFPRKRMKAELMVNASPGAWGVCSDSGWMTAELFLQWFGKFISFSRASKENPILLLLDGHCTHTKNLQVIEEARANGVIILCFPPHTTHRLQPLDVAFMKPVSTYYDQTISSWLRSNPGCVVTTFQVAELFGKAFIRAATMQTAINGFKKCGIWPFDSTVFTEVDFIASMTTDIPLNERTDLGSNINIQSEAAEPEPMQSPIEQTTDQMTDSQPGCSYWPDRQNKTPEPNNDTSFLFTSPQELIPVPVAQQKSRVSRKRGRTEIITSSPYKRELEMVIIKKNKTEKEKEEKMKLKESSNLKLKGKGKEKGKGKGKGKGKGKGKGKGKGKGKGKGKKKSEENAKEDENPSCLYCDGLYLESMEGWISCQVCGKWAHLSCADVGDEDDNDIHVCLFCEANK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00087045;
- 90% Identity
- iTF_00088724;
- 80% Identity
- -