Basic Information

Insect: Anastrepha ludens
Gene Symbol: -
Assembly: GCA_028408465.1
Location: JAPVRI010004419.1:33463-45361[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 7.4e-11 1.9e-07 32.1 0.0 1 38 505 543 505 548 0.89

2 4 2.3e-13 5.8e-10 40.2 0.0 2 39 560 597 559 600 0.94

3 4 2.7e-17 6.9e-14 52.7 0.0 1 45 614 659 614 659 0.98

4 4 1e-18 2.6e-15 57.3 0.0 1 43 666 709 666 711 0.96

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	7.4e-11	1.9e-07	32.1	1	38	505	543	505	548	0.89
2	4	2.3e-13	5.8e-10	40.2	2	39	560	597	559	600	0.94
3	4	2.7e-17	6.9e-14	52.7	1	45	614	659	614	659	0.98
4	4	1e-18	2.6e-15	57.3	1	43	666	709	666	711	0.96

Sequence Information

Coding Sequence: GGCTTGCTACGTACTGCCGAACAGTTGAAAATAAAGGGGCTTTGTGAAACGGCTGAAAACACAGACGATTTGAACGACGCAGCTACCGCTACTATCACAGTATCAGAGAATATACAACAAGCAGTTGTTGGTAACATTGTCAACACTACAGTAGCGCCAGGCCAAGCTTCTCCCAATACacaacatcagcagcaacaacagcaacaacaaattgcaACGAATACGGCAGTGCTCACGCACAATATAGGTAACGTGACTACTGCCAATTCACAACCCATTGGATCTACGGTTACAAATACTGTTGGACAGTTAGTTACCGCAGGACCATCATCTCAACAACAAATAGGACGTAAATCTCGTGTTCGTAAGCGCTCAAAATCGCCAGATTTACAACAGCAGGTACTCAATACTCAACAACAGGTCCAACAGCATCCgcaaacaattttaattcaGAATCAAAATCAAGCTGCTATCGTTAGTTTACAACAGACCTCTTCTGGGAATTATATACCTGTATCCGGAGTTCAAACCGTCACCACCAGTGCAGCTGCGCAGCAGCAGACTGTAATCGCCAGTGACGAGTCAGACACGGATAAGCCGGCGTTGTCGAAAATCTGCAAGACAGAAACAGCGTCCGCGTCACCTGCATCCAGCGTATCCGGTGTATCGGGTTCAAATAATGCTGGAAGCGTAACCACTGTCGCAGCACCAGGCACAGCGATTGTTACGCAGATTGTAGTAGCTCGAGACGGCAAAGACAAAAATATGACTAGTTTAGGAATGGGAATGAACGGCGGAATTCTTGGCGTGCCAATGGGCTTTTTAGATTTTGCACCAGAACCACCAGCACCTTCAGCAACACCTGTAACAGTTACGGAACATGTTGATTTATCATGTAACCCCAATACCGACACCCGAGATTTATCAAACCCCACCGAAGCACTTGACATCGACAATCACTTGGCTCAACATATGATTCAACGGCTTGATCAATCTCCGATGCATGCGATCCACCATCAAACAGGCGATGAGAGTAATTCGAATTTAGTTCAGCATATTAAGAGTGAGGTGATTGACgcgaaacagcaacaacaagtacagcaacagcagcatcatCAGCCACAACAACATCAATTACATGCACAACAACTCACACAAACACAagcacagcagcagcaacaccaacaacagcatCAAATACATCAACAACAAACTTCTCATTCTCATTCAACACACACCCAACAACAAGCACAATCACATCAGGACATATCCGGTGCAACAGTAATGGAAATCGATCCGAGCCAAATAAAACATGAACCTGGAATGATCATAACACCGGAAATAGTTAATATGATGACAACTGGACATATGGatATGTATAATTCAGATACAAGTGAGGATTCAATGATGATAGCAAATGGCTCACCTAACGATCAAAATGAGCCACACTATACGAATTTGGACCAACAACATGTGGATAGTAAAGGTCAGTTTAATGGTCCCAAAACTTGGACTCAAGATGATATGAATTCAGCTTTAGATGCGTTGAAGAATCAAAATATGAGCCTTACAAAGGCTTCAGTTACATATGGCATCCCATCTACAACTTTGTGGCAACGAGCCCATCGTATGGGCATCGAAACCCCAAAGAAGGAAGGTGGTACAAAATCATGGAATGAAGATTCTTTAAATAACGCTCTAGAGGCCCTTCGCTCTGGGCAAATATCAGCAAATAAAGCGTCTAAAGCCTTTGGTATACCTTCGTCGACGCTATACAAAATTGCGCGACGTGAGGGTATACGCTTAGCAGCTCCATTTAATGCGGCTCCAACAACGTGGACTCCGGAAGATTTGGAGCGAGCATTAGAGGCAATACGTGCTGGTCATACATCTGTTCAAAAAGCCAGTGCCGAATTTGGAATTCCGACAGGAACACTTTACGGCCGCTGCAAACGTGAAGGTATCGAATTGTCTCGTTCAAATCCAACACCTTGGTCAGAAGACGCAATGAATGAAGCTCTAAATTCAGTCCGTATTGGTCAGATGTCTATTAATCAGGCCGCGATTCACTACAACCTCCCCTATAGCTCTTTATATGGTCGCTTTAAACGAGGAAAATATGACGTGCCCAATACTAGTAGCACCTCCATAAATAACACATCAGGAAATACTTCGGGAAGCATCGAAATTATCGAGCATAGTCAAGAAAACTCGTTACATATGTTTCAGCAACAGTTCCAATACAGTCCGTCGCCACATCAACAGCCGCAGCATAGTGGTCAAACTCAATCGCAGACGCCTCATTTAACTCAACATGTTGTACACATTCAGCAATCACAGACTCATCATCAGCAGCAAGTGCATgctcaacagcaacaacatatcCAACAACAAGATGTTGTAACATCTAGCAGCCAAGTGGCACATAGCAGTGCAGCGGCTGGGCAGCAGCAACAAATTCAACAGATCTATCATCATCACAGCACGCCGGAAAGAAGTTGA
Protein Sequence: GLLRTAEQLKIKGLCETAENTDDLNDAATATITVSENIQQAVVGNIVNTTVAPGQASPNTQHQQQQQQQQIATNTAVLTHNIGNVTTANSQPIGSTVTNTVGQLVTAGPSSQQQIGRKSRVRKRSKSPDLQQQVLNTQQQVQQHPQTILIQNQNQAAIVSLQQTSSGNYIPVSGVQTVTTSAAAQQQTVIASDESDTDKPALSKICKTETASASPASSVSGVSGSNNAGSVTTVAAPGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPNTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHAIHHQTGDESNSNLVQHIKSEVIDAKQQQQVQQQQHHQPQQHQLHAQQLTQTQAQQQQHQQQHQIHQQQTSHSHSTHTQQQAQSHQDISGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDQNEPHYTNLDQQHVDSKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVPNTSSTSINNTSGNTSGSIEIIEHSQENSLHMFQQQFQYSPSPHQQPQHSGQTQSQTPHLTQHVVHIQQSQTHHQQQVHAQQQQHIQQQDVVTSSSQVAHSSAAAGQQQQIQQIYHHHSTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00979276;
90% Identity: iTF_00192007;
80% Identity: iTF_00082841;