Atra020446.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063578.1:2360150-2362540[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00025 0.017 16.2 0.5 1 20 14 33 14 37 0.91 2 20 0.0073 0.49 11.6 0.1 2 23 43 65 42 65 0.90 3 20 0.051 3.4 8.9 4.7 2 23 70 92 69 92 0.97 4 20 0.0098 0.65 11.2 1.6 2 23 99 120 98 120 0.96 5 20 0.021 1.4 10.1 2.0 1 23 169 191 169 191 0.95 6 20 0.25 17 6.7 0.0 2 21 219 238 218 241 0.87 7 20 0.31 21 6.4 1.9 1 23 261 284 261 284 0.95 8 20 4.8e-06 0.00032 21.6 0.2 1 23 289 312 289 312 0.96 9 20 6.5e-05 0.0043 18.0 0.8 1 23 317 340 317 340 0.98 10 20 0.021 1.4 10.1 1.5 2 23 343 365 343 365 0.96 11 20 0.53 36 5.7 1.5 2 20 372 390 371 392 0.92 12 20 0.0016 0.1 13.7 1.4 1 23 451 474 451 474 0.93 13 20 9 6e+02 1.8 0.0 2 23 502 524 501 524 0.88 14 20 0.068 4.6 8.5 0.0 2 23 547 570 546 570 0.93 15 20 5.3e-05 0.0035 18.3 0.7 3 23 577 598 576 598 0.94 16 20 0.0017 0.12 13.5 2.5 2 23 603 625 602 625 0.94 17 20 0.00089 0.059 14.4 1.1 3 23 632 653 630 653 0.96 18 20 1e-05 0.00067 20.6 5.0 1 23 657 680 657 680 0.98 19 20 0.00031 0.021 15.9 0.3 2 23 687 708 686 708 0.96 20 20 2e-06 0.00014 22.7 0.5 1 23 714 736 714 736 0.98
Sequence Information
- Coding Sequence
- ATGCGATCGCATGTATCTCGACTTCATAAACGTGACGGGTACAAATGTACGATCTGTAATCTAGAATTTAATTCTAGAGATTCCTTGCAGTCACACTCTGGTAACGCTCACGGGACAAAGATATCCAAATGTCCAGAGTGCCCAGAGGCGTTCTCTTCCAAAAATATAATGAGAAGACATCTTATAGACGCGCACGGCACAGGACAGAAGTGCCAGCATTGCGGGAAACTATTTCCGAAAAAATGCCTAATGCTCGATCACGTGCGCAGCACGCATTTGAAAGAGAAGAATGTACAATGCAATATGTGTCAACAGAAGTTCTTCAATGGACGCCTTCTGAAAAAGCACCTAGTAAAACATTTCGGGGAAAGAAACTTCCACTGCGACATTTGCGatgAATACCCACCTGGCCCTTACGATGGCTGCGCGTCTGAACGCAGAAGGAAAAACTTAAGAATCCTCTTCAACAACACTACTATTATCCCGTTCAAATGGCGGGGCAAGTTCCTCTGCTTCTACTGCGCCAAAAGCTATTCAGAGTACCCCGAATTCAGAAAGCACACCAAGTCTCACGGACCGTGCACTACAAAGGATTATGCCTTGAAAGTTATAAAAGGCAATCACATAGAAATTAAGGTAGACGTTTCGGAGATAACATGCGATATTTGTAATGAACCATTTGGGAATATGTCTGAGATAGTCGATCATCTTGTCGGTAAGCATAACATGGAGTACGACAAGTCTGTAGACATACCGTTTCAAGCGTACAGATTGATCGATTTCAAGTGTTTGTGCTGCGATCAACAATTCTCTTATTTCGGAAGCTTGGTCAGTCATGTCAATATAATGCATCCTCAGAATAGTTTCATCTGTGACGACTGCGGCgctacttttaataaaaagaggGACTTGGCTGTGCATATGAGGAATCTCCACCGGCAGGGCGGATACCCTTGTGATCAGTGTACGGAGAACTTCGATACTTATTACTCGCTCCGTACTCATCAAAATACTGCGCATTTTAGAAAGTGTAAAAATTGCAGTTTGCATTTCCTTTCGCCTGCTCTTTTGCAAAAGCATATGAAAGCCGAACACCCTGAAGATGGGAATGTTAAGTGTTCGTTTTGCGGTAAAGAGTGTCACTCGACTAATGGTCTGGCACAGCACACGGCCCGGTGTAAGGTCAAGCTGATCGCACAGCCAGACGAGCCGCCACCGCCTGTCTTCGACTCCTTCCCCTCGGGTGTCGGCTCGAAACCCAAGAAGAAACAGAACATTTTACAGATCAGGCAAAATATTCAGTGCGTTCTCAACATGTCCACTGCTATCCCATTCAAATTTTTCTCCAAATTCTCCTGCTTCTACTGCTCTAAAAAGTTCACGGAATACGAGGAATTGAAAGAGCATACTATATTGGAGCACCCCGTTTGCGAACTTAAATCTAAATGCATGAAGAAATGTAAAGGCGAAAGGATCACTGTTAAAATTGACATAGCGTGCTTGTCTTGTAAGATTTGTTCGCAGCCAATGTCAGAACTGGACGTCCTCATAGACCATTTGATAGTAGAGCATAAGGCTAACTACGACAAATCTTTTACTCGTTGCTTCGAGCCGTTCAAGATAATCAAAGATAGTCTGCCGTGTCCGGTTTGTCCCGAACGTGTGTTCAGATATTTCGCGACCCTGTTGAAACATTTGAACGCTGAGCACAGTAATAACAATAGGATATGCGACTTCTGCGGCCGCTGTTTCCGAAACGTGGCCAATCTCAAAGTTCACATCTCGTACGCGCATACTGGTTGTTGCGAATGCACTATTTGCGGAGCGAAGTATAAAAACCAGTGGTGTCTAGCCCGCCACAGGGCTAAGGTACACAACGCTAAAGACTACGGATGTACGAAATGTCCTGAGAAATTTCCATCGGCGTATCACAGACAGAAGCATATGATTAAAGCACACGATATTGGTCACAAATGCACGTATTGCGGTAGAATGTTCACAAGGAACTCCTTCATGAAAGATCATATACGGAGGACCCATTTGAGAGAGAAGAATGTTCCGTGCTCCGTGTGTAACGAGAGGTTCTTCGATAACTATCTGCTGCGCATGCACATGGTGAAGCACGATGGTGAGAGGAAGTTCACTTGTGACGTCTGCGGCAAGGCCTTTCTGAGGAGAAGCAACTTGCAATCCCATATGGATATGCACAAGAAGTATGGTCATGTATCGGTGCCTATTTAA
- Protein Sequence
- MRSHVSRLHKRDGYKCTICNLEFNSRDSLQSHSGNAHGTKISKCPECPEAFSSKNIMRRHLIDAHGTGQKCQHCGKLFPKKCLMLDHVRSTHLKEKNVQCNMCQQKFFNGRLLKKHLVKHFGERNFHCDICDEYPPGPYDGCASERRRKNLRILFNNTTIIPFKWRGKFLCFYCAKSYSEYPEFRKHTKSHGPCTTKDYALKVIKGNHIEIKVDVSEITCDICNEPFGNMSEIVDHLVGKHNMEYDKSVDIPFQAYRLIDFKCLCCDQQFSYFGSLVSHVNIMHPQNSFICDDCGATFNKKRDLAVHMRNLHRQGGYPCDQCTENFDTYYSLRTHQNTAHFRKCKNCSLHFLSPALLQKHMKAEHPEDGNVKCSFCGKECHSTNGLAQHTARCKVKLIAQPDEPPPPVFDSFPSGVGSKPKKKQNILQIRQNIQCVLNMSTAIPFKFFSKFSCFYCSKKFTEYEELKEHTILEHPVCELKSKCMKKCKGERITVKIDIACLSCKICSQPMSELDVLIDHLIVEHKANYDKSFTRCFEPFKIIKDSLPCPVCPERVFRYFATLLKHLNAEHSNNNRICDFCGRCFRNVANLKVHISYAHTGCCECTICGAKYKNQWCLARHRAKVHNAKDYGCTKCPEKFPSAYHRQKHMIKAHDIGHKCTYCGRMFTRNSFMKDHIRRTHLREKNVPCSVCNERFFDNYLLRMHMVKHDGERKFTCDVCGKAFLRRSNLQSHMDMHKKYGHVSVPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01302600; iTF_00012232; iTF_00013321; iTF_00651979; iTF_00640693;
- 90% Identity
- iTF_01302600; iTF_00012232; iTF_00013321; iTF_00651979; iTF_00640693;
- 80% Identity
- -