Eelu036228.1
Basic Information
- Insect
- Ephestia elutella
- Gene Symbol
- -
- Assembly
- GCA_018467065.1
- Location
- CM031587.1:6578036-6579913[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.018 2.3 10.4 2.0 1 23 50 72 50 72 0.95 2 16 0.92 1.1e+02 5.0 0.0 3 21 101 119 99 122 0.85 3 16 0.27 33 6.7 1.9 1 23 142 165 142 165 0.95 4 16 4.1e-06 0.0005 21.9 0.2 1 23 170 193 170 193 0.96 5 16 0.00027 0.033 16.2 1.1 1 23 198 221 198 221 0.97 6 16 0.018 2.3 10.4 1.5 2 23 224 246 224 246 0.96 7 16 0.014 1.8 10.7 1.5 2 21 253 272 252 273 0.94 8 16 0.0027 0.33 13.0 1.6 1 23 330 353 330 353 0.93 9 16 1.9 2.4e+02 4.0 0.0 2 23 381 403 380 403 0.91 10 16 0.059 7.2 8.8 0.0 2 23 426 449 425 449 0.93 11 16 4.5e-05 0.0056 18.6 0.7 3 23 456 477 455 477 0.94 12 16 0.0015 0.18 13.8 2.5 2 23 482 504 481 504 0.94 13 16 0.0028 0.34 13.0 1.0 3 23 511 532 509 532 0.96 14 16 8.7e-06 0.0011 20.9 5.0 1 23 536 559 536 559 0.98 15 16 0.00027 0.033 16.2 0.3 2 23 566 587 565 587 0.96 16 16 1.8e-06 0.00022 23.0 0.5 1 23 593 615 593 615 0.98
Sequence Information
- Coding Sequence
- ATGTGGCGTAACTACAGCGAGAAACATTTATTTTCAGATGAATACGCTCCTGGCCCTTACGATGGCTGCGCGTCTGAACGCAGAAGGAAAAACTTAAGAATCCTCTTCAACAACACAACTATTATCCCGTTCAAATGGCGGGGCAAGTTCCTCTGCTTCTACTGCGCCAAAAGCTATTCGGAGTATCCCGAATTCAGAAAGCATACCAAATCGCACGGGCCGTGTACTACCAAGGATTATGCGCTGAAAGTTATCAAAGGAAACCATATAGAGATCAAGGTAGACGTGTCCGAAGTTATATGCGACATATGTAACGAACCTTTTGGCAATATGACTGAGATAATCGATCATCTAGTCGGTAAGCATGGTATGGAATACGACAAGAGCGTAGATATACCGTTCCAAGCTTACAGATTGTTGGACTTCAAATGTCTGTGTTGCGACCAGCAATTCTCGTATTTCGGCAGTTTAGTCAGCCACGTCAATATCATGCATCCTCAGAATAGTTTCATTTGCGACGACTGTGGGGCCACTTTCAACAAAAAGAGGGACTTGGCCGTGCACATGAGGAACCTTCACCGCCAGGGCGGGTACGCGTGCGATCAATGCACGCAAAACTTTGACACTTACTATTCATTGCGTACTCATCAAAACAGTGCTCATTTTAGAAAATGTAAGAATTGTAGCTTGCATTTCTTGTCGCCCGCTCTTTTGCAAAAGCATATGAAGGCTGAGCATCCTGAAGACGGGAATGTTAAATGTTCGTTTTGCGGCAAAGAGTGTCATTCTAAGAACGGCCTCGCGCAACACATGGCTCGTTGTAAAGTTAAGTTGATCGCACAACCGGACGAACCGCCGGTTTTCGACGCCTTCCCTACAGAAGTCGGCGTCAAGCCGAAGAAAAAGCAGAACATATTACAGATCCGACAAAACATTCAGTGCGTACTCAACATGTCCACAGCAATCCCTTTCAAATTCTTTTCGAAATTCTCCTGTTTTTATTGCTCTAAAAAGTTTACGGAATTCGAGGAGTTGAAAGACCATACAATATTGGAGCATCCGATATGCGAACTCAAATCTAAATGCATGAAAAAATGCAAAGGCGAACGGATTACCGTTAAAATAGACATCGCGTGCTTATCCTGCAAAATATGTTCGCAACCCATGTCGGAATTAGATGCTCTAATAGACCATTTAATATTAGAGCATAAAGCAAATTACGATAAGACTTTTACTCGTTGTTTTGAGCCGTTCAAACTTATCAAGGACAACCTACCGTGCCCCGTGTGTCCCGAGCGTGTTTTCAGATATTTCGCAACATTGCTAAAACATCTAAACGCTGAGCACAGCAATAACAACAGGATATGTGATTTCTGCGGCCGTTGCTTCAGAAACGTTGCAAATTTGAAGGTTCACATATCGTACGCCCACACAGGGTGTTGCGAATGTACCATTTGCGGGGCTAAATATAAAAACCAGTGGTGTTTAGCTCGTCACAGGGCTAAAGTACACAACGCAAAAGACTATGGGTGTACGAAATGCCCTGAAAAGTTCCCTTCGGCGTATCACAGACAGAAGCATTTGATCAAAGCTCACGATATCGGTCATAAGTGTACATATTGCGGCAGAATGTTTACTAGGAATTCGTTCATGAAAGACCATATTAGAAGGACGCATTTGAGGGAGAAAAATGTTCCATGTTCCGTTTGTAACGAGAGGTTCTTCGACAATTATTTACTTAGGATGCATATGGTGAAGCATGATGGAGAAAGGAAGTTTACGTGTGACGTTTGCGGAAAAGCGTTCCTCAGAAGAAGCAATTTGCAGTCCCATATGGACATGCATAAGAAATACGGGCACGTATCAGTGCCAATATGA
- Protein Sequence
- MWRNYSEKHLFSDEYAPGPYDGCASERRRKNLRILFNNTTIIPFKWRGKFLCFYCAKSYSEYPEFRKHTKSHGPCTTKDYALKVIKGNHIEIKVDVSEVICDICNEPFGNMTEIIDHLVGKHGMEYDKSVDIPFQAYRLLDFKCLCCDQQFSYFGSLVSHVNIMHPQNSFICDDCGATFNKKRDLAVHMRNLHRQGGYACDQCTQNFDTYYSLRTHQNSAHFRKCKNCSLHFLSPALLQKHMKAEHPEDGNVKCSFCGKECHSKNGLAQHMARCKVKLIAQPDEPPVFDAFPTEVGVKPKKKQNILQIRQNIQCVLNMSTAIPFKFFSKFSCFYCSKKFTEFEELKDHTILEHPICELKSKCMKKCKGERITVKIDIACLSCKICSQPMSELDALIDHLILEHKANYDKTFTRCFEPFKLIKDNLPCPVCPERVFRYFATLLKHLNAEHSNNNRICDFCGRCFRNVANLKVHISYAHTGCCECTICGAKYKNQWCLARHRAKVHNAKDYGCTKCPEKFPSAYHRQKHLIKAHDIGHKCTYCGRMFTRNSFMKDHIRRTHLREKNVPCSVCNERFFDNYLLRMHMVKHDGERKFTCDVCGKAFLRRSNLQSHMDMHKKYGHVSVPI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00073038;
- 90% Identity
- iTF_00073038;
- 80% Identity
- -