Basic Information

Insect: Elegia similella
Gene Symbol: -
Assembly: GCA_947532085.1
Location: OX383952.1:7439254-7442119[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.017 1.3 10.5 3.0 1 23 82 104 82 104 0.95

2 15 0.38 29 6.2 0.0 2 21 132 151 131 154 0.86

3 15 0.27 21 6.6 1.9 1 23 174 197 174 197 0.95

4 15 4.2e-06 0.00032 21.8 0.2 1 23 202 225 202 225 0.96

5 15 0.00017 0.013 16.8 0.4 1 23 230 253 230 253 0.97

6 15 0.00023 0.017 16.3 1.5 2 23 256 278 255 278 0.95

7 15 0.083 6.3 8.3 1.5 2 20 285 303 284 305 0.91

8 15 0.0026 0.2 13.0 1.5 1 23 362 385 362 385 0.93

9 15 0.06 4.6 8.7 0.0 2 23 458 481 457 481 0.93

10 15 4.6e-05 0.0035 18.5 0.7 3 23 488 509 487 509 0.94

11 15 0.0014 0.11 13.9 2.5 2 23 514 536 513 536 0.94

12 15 0.0029 0.22 12.9 1.0 3 23 543 564 541 564 0.96

13 15 8.9e-06 0.00068 20.8 5.0 1 23 568 591 568 591 0.98

14 15 0.00027 0.021 16.1 0.3 2 23 598 619 597 619 0.96

15 15 1.8e-06 0.00014 23.0 0.5 1 23 625 647 625 647 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.017	1.3	10.5	3.0	1	23	82	104	82	104	0.95
2	15	0.38	29	6.2	0.0	2	21	132	151	131	154	0.86
3	15	0.27	21	6.6	1.9	1	23	174	197	174	197	0.95
4	15	4.2e-06	0.00032	21.8	0.2	1	23	202	225	202	225	0.96
5	15	0.00017	0.013	16.8	0.4	1	23	230	253	230	253	0.97
6	15	0.00023	0.017	16.3	1.5	2	23	256	278	255	278	0.95
7	15	0.083	6.3	8.3	1.5	2	20	285	303	284	305	0.91
8	15	0.0026	0.2	13.0	1.5	1	23	362	385	362	385	0.93
9	15	0.06	4.6	8.7	0.0	2	23	458	481	457	481	0.93
10	15	4.6e-05	0.0035	18.5	0.7	3	23	488	509	487	509	0.94
11	15	0.0014	0.11	13.9	2.5	2	23	514	536	513	536	0.94
12	15	0.0029	0.22	12.9	1.0	3	23	543	564	541	564	0.96
13	15	8.9e-06	0.00068	20.8	5.0	1	23	568	591	568	591	0.98
14	15	0.00027	0.021	16.1	0.3	2	23	598	619	597	619	0.96
15	15	1.8e-06	0.00014	23.0	0.5	1	23	625	647	625	647	0.98

Sequence Information

Coding Sequence: ATGTCCTCAATGCTCGGAGACCTTCTCTTCCAAAAACGTAATGAGGAGGCATTTGATAGATGTTCACGGAACGGGACAGAAATGCCATCATTGCGGGAAGTTGTTCCCGAAGAAATGTCTTATGCTCGCACATATGAGTATGCCCCCGGACCGTACGAGGGCTGCGCGTCTGAACGGAGGAGGAAAAACTTGAGAATACTCTTCAACAACACCTCCATAATCCCGTTCAAATGGCGCGGCAAGTTCCTCTGTTTCTACTGCGCCAAAAGCTACTCAGAGTATACAGAGTTCAGAAAGCACACCAAGTCTCACGGGCCCTGTACTACGAAGGATTACGCGCTTAAAGTAATCAAAGGCAACCATATAGAAATCAAAGTGGACGTGTCGGAGATCGTATGCGATATATGTAACGAACCTTTTGGAAGTATGTCTGAAATAGTAGATCATCTTGTTGGTAAGCATAATATGGAGTACGACAAAGGTGTAGATATACCTTTCCAAGCGTACAGACTGATAGACTTCAAATGCTTGTGTTGCGATCAGCAGTTCTCGTATTTTGGAAGTTTAGTGAGCCACGTCAATATTATGCATCCTCAAAACAGCTTTATATGTGACGACTGTGGAGCAACGTTTAATAAGAAGAGAGATTTGGCTGTGCATATGAGGAATCTTCACCGCCAAGGCGGATACCCTTGCGATCAGTGTACAGAGAACTTTGATACGTATTACGCGCTGCGTACGCATCAAAATTCCGCGCACTTTAAGAAATGTAAAAATTGTAGCTTACATTTCGTTTCGCCCGCTCTTTTGCAAAAGCATATGAAAGCTGAACATCCCGAAGATGGGAATCTTAAATGTTCTTACTGCGGTAAAGAATGCCATTCTACGAACGGCCTGGCACAACATACGGCTAGATGTAAAGTCAAATTAATCGCTCAGCCAGATGATCCCCCGATAGTGGATTCCTTCCCAACAGACGTCGGCATAAAACCGAAGAAGAAGCAAAACATATTGCAGATCAGACAAAACATACAGTGCGTCCTCAACATGTCCACAGCGATACCTTTTAAGTTCTTCTCCAAATTCTCTTGTTTTTATTGCTCTAAAAAGTTCACGGAATTCGAGGAACTAAAAGAGCACACGATTTTAGAGCATCCGGTATGCGAAATCAAATCTAAATGCATGAAGAAATGCAAAGGCGAAAGGATAACAGTTAAAATTGATATAGCATGCTTATCTTGTAAAATATGTTCGCTGCCAATGCAAGAGTTAGACGCTCTCATTGACCATTTGATCTTGGAGCATAAGGCGAACTACGATAAATCCTTCACCCGTTGCTTCGAGCCGTTTAAGCTCATAAAAGACAATCTTCCCTGTCCGGTTTGTCCCGAGCGAGTATTTAGATACTTCGCCACGTTACTGAAACACTTAAACGCAGAACACAGTAATAATAACCGAATATGTGATTTCTGCGGACGTTGCTTCCGAAATGTGGCCAATTTGAAAGTACATATATCATATGCGCATACAGGTTGTTGTGAATGTACGATTTGCGGGGTTAAATATAAAAACCAGTGGTGTTTAGCTCGTCACAGAGCAAAGGCTCACAACGCTAAAGACTATGGCTGTACGAAATGTCCCGAGAAATTCCCGTCAGCGTACCATAGACAAAAGCATTTGATAAAGGCGCACGATATCGGTCATAAATGTACTTACTGCGGGAGAATGTTCACTAGGAACTCCTTTATGAAAGATCATATTCGCAGGACGCATTTGAGGGAGAAAAATGTTCCGTGTTCAGTATGTAACGAGAGGTTCTTCGATAATTATTTGCTTCGTATGCACATGGTGAAACATGATGGTGAGAGGAAGTTTACTTGTGACGTGTGTGGTAAAGCGTTTTTGAGGAGAAGTAACTTGCAATCGCATATGGACATGCATAAAAAGTATGGCCATGTGTCAGTACCGCTATAA
Protein Sequence: MSSMLGDLLFQKRNEEAFDRCSRNGTEMPSLREVVPEEMSYARTYEYAPGPYEGCASERRRKNLRILFNNTSIIPFKWRGKFLCFYCAKSYSEYTEFRKHTKSHGPCTTKDYALKVIKGNHIEIKVDVSEIVCDICNEPFGSMSEIVDHLVGKHNMEYDKGVDIPFQAYRLIDFKCLCCDQQFSYFGSLVSHVNIMHPQNSFICDDCGATFNKKRDLAVHMRNLHRQGGYPCDQCTENFDTYYALRTHQNSAHFKKCKNCSLHFVSPALLQKHMKAEHPEDGNLKCSYCGKECHSTNGLAQHTARCKVKLIAQPDDPPIVDSFPTDVGIKPKKKQNILQIRQNIQCVLNMSTAIPFKFFSKFSCFYCSKKFTEFEELKEHTILEHPVCEIKSKCMKKCKGERITVKIDIACLSCKICSLPMQELDALIDHLILEHKANYDKSFTRCFEPFKLIKDNLPCPVCPERVFRYFATLLKHLNAEHSNNNRICDFCGRCFRNVANLKVHISYAHTGCCECTICGVKYKNQWCLARHRAKAHNAKDYGCTKCPEKFPSAYHRQKHLIKAHDIGHKCTYCGRMFTRNSFMKDHIRRTHLREKNVPCSVCNERFFDNYLLRMHMVKHDGERKFTCDVCGKAFLRRSNLQSHMDMHKKYGHVSVPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00073038;
90% Identity: iTF_00073038;
80% Identity: -