Rfor026690.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720229.1:6077687-6080695[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 4.2 3.4e+02 2.9 0.4 9 23 2 17 1 17 0.92 2 21 1.3e-05 0.0011 20.2 0.7 1 23 22 45 22 45 0.95 3 21 0.0016 0.13 13.6 0.4 2 23 51 73 50 73 0.92 4 21 0.043 3.5 9.1 3.9 2 23 78 100 77 100 0.97 5 21 0.0086 0.7 11.3 1.2 2 23 107 128 106 128 0.96 6 21 0.091 7.4 8.1 1.9 1 23 134 156 134 156 0.97 7 21 0.019 1.6 10.2 3.0 1 23 197 219 197 219 0.95 8 21 0.45 36 5.9 0.0 2 21 247 266 246 269 0.86 9 21 0.32 26 6.4 1.9 1 23 289 312 289 312 0.95 10 21 4.9e-06 0.0004 21.5 0.2 1 23 317 340 317 340 0.96 11 21 0.0002 0.016 16.5 0.4 1 23 345 368 345 368 0.97 12 21 0.00027 0.022 16.1 1.5 2 23 371 393 370 393 0.95 13 21 0.096 7.8 8.0 1.5 2 20 400 418 399 420 0.91 14 21 0.0031 0.25 12.7 1.5 1 23 477 500 477 500 0.93 15 21 0.07 5.7 8.5 0.0 2 23 573 596 572 596 0.93 16 21 5.4e-05 0.0044 18.3 0.7 3 23 603 624 602 624 0.94 17 21 0.0016 0.13 13.6 2.5 2 23 629 651 628 651 0.94 18 21 0.0034 0.27 12.6 1.0 3 23 658 679 656 679 0.96 19 21 1e-05 0.00085 20.5 5.0 1 23 683 706 683 706 0.98 20 21 0.00032 0.026 15.8 0.3 2 23 713 734 712 734 0.96 21 21 2.1e-06 0.00017 22.7 0.5 1 23 740 762 740 762 0.98
Sequence Information
- Coding Sequence
- ATGGCTTTTCGGACTGAAACTAATATGCGCTCGCATATATCCCGTCTCCATAAACGAGACGGATACAAATGTACTATATGCGACTTAGAATTTTCTTCAAGAGACGCTTTACAGACTCATCAAGGAAAGTTCCACGGCACTAAGATATCCAAATGTCCTCAGTGTTCCGAGACGTTCTCTTCCAAAAACGTAATGAGGAGGCATTTGATAGACGCTCACGGTACGGGACAGAAGTGTCTTCACTGCGGGAAGTTATTCCCGAAGAAATGTCTCATGCTCGCTCACGTACGCAGTACgcatttgaaagaaaagaaTGTACAATGCAACATGTGCCAGCAGAGATTCTTCGACGGGCGCCTTCTAAAGAAGCATTTAGTAAAACATTTCGGGGAGAGGAACTTCCATTGCGACATTTGCAGCAAACAGTTCCTATGGAAGAAGAATTTGATTGTGCATATGTCTTCTCACATCGAAAACTatGAGTACGCCCCCGGGCCGTACGAGGGCTGCGCGTCTGAACGGAGGAGGAAAAACTTAAGAATACTCTTCAACAACACCTCCATAATCCCGTTCAAATGGCGCGGCAAGTTCCTCTGTTTCTACTGCGCCAAAAGCTACTCAGAGTACACAGAGTTCAGAAAGCACACCAAGTCTCACGGGCCCTGTACCACGAAGGATTACGCGCTCAAAGTTATAAAAGGCAACCATATCGAAATCAAAGTGGATGTGTCGGAGATCGTATGCGATATTTGTAATGAACCTTTTGGGAGTATGTCTGAGATTGTAGATCATCTTGTCGGTAAGCATAATATGGAGTACGACAAAGGTGTGGAGATACCTTTCCAAGCGTACAGATTGATAGACTTCAAATGTTTGTGTTGCGATCAGCAATTCTCGTATTTTGGAAGTTTGGTGAGCCACGTCAATATTATGCATCCTCAAAACAGTTTCATCTGTGATGACTGCGGCGCCACATTTAATAAGAAGAGAGATTTGGCTGTGCATATGAGGAATCTTCACCGCCAAGGCGGATACCCTTGCGATCAGTGTACTGAGAACTTTGACACGTATTACGCGCTGCGTACGCATCAAAACTCCGCGCACTTTaagaaatgtaaaaattgtaGCTTGCATTTCGTTTCGCCCGCTCTGTTGCAAAAGCATATGAAAGCTGAACATCCGGAGGATGGTAATCTAAAATGTTCTTACTGCGGAAAGGAATGCCATTCTACGAACGGTCTGGCGCAGCACACGGCTAGATGTAAAGTCAAGTTGATCGCACAACCAGACGATCCCCCAATAGTAGATTCTTTCCCGACAGACGTCGGCATAAAACCGAAGAAGAAGCAAAACATATTGCAGATCAGACAAAACATACAGTGTGTCCTCAACATGTCCACAGCTATACCTTTTAAGTTCTTCTCCAAATTCTCTTGCTTCTATTGCTCTAAAAAGTTCACGGAATTTGAGGAACTAAAAGAACATACGATTTTAGAACACCCGGTTTGTGAAATCAAATCTAAATGCATGAAGAAGTGCAAAGGTGAACGGATAACAGTTAAAATTGATATCGCATGTTTATCTTGTAAAATATGTTCTCTGCCGATGCAAGAGTTAGACGCTCTAATAGACCATTTGATCGTGGAGCATAAGGCGAACTACGATAAATCCTTCACCCGTTGCTTCGAGCCGTTTAAGCTCATAAAAGATAACCTTCCCTGTCCTGTTTGTCCTGAACGAGTATTTAGATATTTCGCGACGTTACTTAAACATTTGAACGCGGAACATAGTAATAACAACCGAATATGCGATTTCTGTGGACGATGCTTCCGAAATGTTGCCAACTTGAAAGTGCACATATCATATGCACATACAGGTTGTTGTGAATGTACGATTTGTGGCGTAAAATATAAGAATCAGTGGTGCCTAGCGCGTCACAGAGCCAAGGCTCATAACGCTAAAGACTACGGATGTACAAAATGTCCCGAAAAGTTCCCGTCAGCGTACCATAGACAAAAACATCTCATAAAAGCACACGATATCGGACATAAATGCACTTACTGCGGGAGGATGTTTACTAGGAACTCTTTTATGAAAGACCATATTCGTAGGACGCATTTGAGGGAGAAAAATGTCCCGTGTTCGGTGTGCAATGAAAGGTTCTTTGACAACTATTTACTTCGGATGCACATGGTGAAACACGATGGAGAGAGGAAGTTCACTTGTGACGTATGTGGTAAGGCGTTTTTGAGACGAAGTAACCTGCAATCACACATGGATATGCATAAGAAATATGGGCACGTGTCAGTGCCGCTTTAA
- Protein Sequence
- MAFRTETNMRSHISRLHKRDGYKCTICDLEFSSRDALQTHQGKFHGTKISKCPQCSETFSSKNVMRRHLIDAHGTGQKCLHCGKLFPKKCLMLAHVRSTHLKEKNVQCNMCQQRFFDGRLLKKHLVKHFGERNFHCDICSKQFLWKKNLIVHMSSHIENYEYAPGPYEGCASERRRKNLRILFNNTSIIPFKWRGKFLCFYCAKSYSEYTEFRKHTKSHGPCTTKDYALKVIKGNHIEIKVDVSEIVCDICNEPFGSMSEIVDHLVGKHNMEYDKGVEIPFQAYRLIDFKCLCCDQQFSYFGSLVSHVNIMHPQNSFICDDCGATFNKKRDLAVHMRNLHRQGGYPCDQCTENFDTYYALRTHQNSAHFKKCKNCSLHFVSPALLQKHMKAEHPEDGNLKCSYCGKECHSTNGLAQHTARCKVKLIAQPDDPPIVDSFPTDVGIKPKKKQNILQIRQNIQCVLNMSTAIPFKFFSKFSCFYCSKKFTEFEELKEHTILEHPVCEIKSKCMKKCKGERITVKIDIACLSCKICSLPMQELDALIDHLIVEHKANYDKSFTRCFEPFKLIKDNLPCPVCPERVFRYFATLLKHLNAEHSNNNRICDFCGRCFRNVANLKVHISYAHTGCCECTICGVKYKNQWCLARHRAKAHNAKDYGCTKCPEKFPSAYHRQKHLIKAHDIGHKCTYCGRMFTRNSFMKDHIRRTHLREKNVPCSVCNERFFDNYLLRMHMVKHDGERKFTCDVCGKAFLRRSNLQSHMDMHKKYGHVSVPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00073038;
- 90% Identity
- iTF_00073038;
- 80% Identity
- -