Ccla013159.2
Basic Information
- Insect
- Caradrina clavipalpis
- Gene Symbol
- lov
- Assembly
- GCA_932526535.1
- Location
- OW052104.1:11486718-11491539[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-18 1.1e-15 57.3 0.0 1 44 84 127 84 128 0.96
Sequence Information
- Coding Sequence
- ATGGAGAAGAACGAGCAAGAATTCATTATTTTGCTCGTTCTAAAACATAGTGTCTTCTGTTTTGTTCCAGTGTTCGGCATGGACTCTCCGCTGGGCCTGTTCCCACCGGGCATGGAACACAAGATGTACCCCATGATGGACGTGGAACACCGCGCGCCGCTTGACGCACAACTATTTACTAACGTTAAAAAGAAATGGCGACCGAAGGGTCAGCACAGCGCGCCGCGCGGCGGTCCGCCTCGATCGTGGACGAACGCCGAGCTCACGGAGGCGCTGCAGCACGTGTGGAACAAGAAGATGACGACGAGCCAAGCGTCCAGGATCTTCGGCATCCCGTACAACTCGCTGCTCATGTACGTACGCGGGAAGTACGGGAAGAGCCTAAAGCTCGAGCAGCTCAGGAAAGACTGTATCGGCGGACCGCTGGACGTGCTAAACCTCAACTCCGGCAACAACAACAACAACCAACCCTCAAGCAAACACCACGACAAAGACGACCACTCACAGCGACCAGCGAGCTCCGAGCCAGACATCGCCTCGAATCCCATGTTCAATCCATTCCAGCAAGGGTTCTACCCCGAGTTCCCGCCAGGGTTCCCGATGCCGCTCAACATGCTGCATCTACTCCCGCCGAACGACAAAGCGAGGGAACTGTATCAGTCGATGCCGATGGCTCTGGACTCGCTGTCAGGAGTAACGAAAGAGGAGGATTGTAAGAGTGACAGGTCAAAGGAGAACTCGGCTGATGAGGAGGGCGACCCGTACCGCGCGCCCTCGCATCCGCCGCATCCGCCCGACACGCGCCAGCTGCTGCACCACAACGGCCAGGACTAG
- Protein Sequence
- MEKNEQEFIILLVLKHSVFCFVPVFGMDSPLGLFPPGMEHKMYPMMDVEHRAPLDAQLFTNVKKKWRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGGPLDVLNLNSGNNNNNQPSSKHHDKDDHSQRPASSEPDIASNPMFNPFQQGFYPEFPPGFPMPLNMLHLLPPNDKARELYQSMPMALDSLSGVTKEEDCKSDRSKENSADEEGDPYRAPSHPPHPPDTRQLLHHNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264319;
- 90% Identity
- iTF_00072104;
- 80% Identity
- iTF_00809028;