Ajug000413.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amorpha juglandis
Gene Symbol
-
Assembly
GCA_949126905.1
Location
OX421365.1:4236757-4247752[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.066 4.2 8.4 1.8 1 23 233 255 233 255 0.96
2 16 0.025 1.6 9.8 0.0 2 23 284 306 283 306 0.94
3 16 0.0066 0.42 11.6 0.3 2 23 327 349 326 349 0.95
4 16 0.00036 0.023 15.6 2.6 2 23 355 377 354 377 0.95
5 16 0.0013 0.08 13.8 1.2 1 23 382 405 382 405 0.96
6 16 0.47 30 5.8 0.5 2 23 408 430 407 430 0.92
7 16 0.0017 0.11 13.4 1.0 2 22 437 457 436 457 0.93
8 16 0.0034 0.22 12.5 0.6 1 23 518 541 518 541 0.93
9 16 0.13 8.4 7.5 0.1 3 23 570 591 568 591 0.94
10 16 0.041 2.6 9.1 0.2 3 23 615 637 613 637 0.94
11 16 0.00054 0.034 15.0 0.4 3 20 644 661 642 665 0.90
12 16 0.0091 0.58 11.1 0.9 1 23 670 693 670 693 0.97
13 16 0.002 0.12 13.2 0.3 2 23 699 721 699 721 0.94
14 16 0.00013 0.0085 16.9 5.0 1 23 725 748 725 748 0.97
15 16 0.00019 0.012 16.4 0.6 2 23 755 776 754 776 0.96
16 16 0.0015 0.092 13.7 1.0 1 23 782 804 782 804 0.98

Sequence Information

Coding Sequence
ATGGAGTTTGACGAGATTGTAGTGAAGGAGAGCCCCGGTTTGTGCCGGTGTTGTCTCTCCGAAGGATGTTACAAGGACCTTGGTTCGGAGTACACTTGGATGAACGACAATGAAGTTTATGCTGATATGTTGTTGGAATGTTTTGATATAAGCATAACTCAACATAATGATGGGCCGAATGGTCCAAATCGTTTGATATGTGAAGTGTGCATCACCCGGCTCCGTGACGCATGCAACTTCAAGAAACAGGTGTTGGAGTCTGAGAAGAAATTCATTGACATGGTGGCACGGGGCGATTTTAAGCCAAAGATGCTGATATACCAGACCCAGATGAAGTCTGAAGAAAATGTTGAAGTCAATATTGAGGACATCGAGTATCTTGACGATGAAATGGATTTTGCGGAcgatGAACCCCTCAAACGTGAAGATCCATCAGAGCCCACAGTATCTAAGATTACGGTAGAATCTTTACCGGTGAAAGGCAAGCGAGGCAGACCGCGCAAAAATGAAGTCAAAACAGAGAAGCGGATCAAACTGCCCAAGACTGAGGAGAAGCCGAAGACGTCGAAAGCTGTCGCAAAAGATGTTACACCGAGGAAATACAGGGGCTGTGAATCATCTTCAATGCGCAGAAGAAAAAACCTCCAAATCATTTTCAACAGCACCTCTATCATACCGTTCAAATGGCGCGGCAAGTATTTATGTTTCTACTGCAGCAAAGACATCTCGGAGTACACCGAGCTCAGGAAACATACTAAGTCGCACGGCAGCTGCTCCATCCGCGACCATTCTCTCAAAGTGCTTAAGGGAGGGCAGAACATGGAGATTAAGATCGATGTGTCTGATGTTACTTGCGAGATTTGCAGCGAGCCTTTTCCGACATTAGACGAGGTATTGAACCATTTGTACATAAAACACAAACTTGAGTACGACAAAGGAGTGGAAATGGCTATTGAAGAGTACAGACTGATTGACCTTAGTTGTTTGTTGTGTGGTGAAAAGTTCACTTACTTCGGTTATTTGGTATCCCATGTCAATAGTACTCACCCGAAGAACTGCCTAATATGTGACAAATGTAACCAAAAGTTCAATAAAAAACGAGATCTATTTTCTCATATGAAGAATTATCACAGGGAAGGTGGATATCAGTGTGAGATGTGTCCTCAGACTTTTAGTTCATTAAACATACTGAGGAAACATAGAAACAACAGACACTTGACACGATGTAACATTTGCCATTTAAAGCTCCCTTCGGCGGCGTTGAAACAAAAACATATAGATCTGGAACACCCAGACGATGGTTCTTTACAATGCGATAACTGTGATAAAGAGTTTCATACGAAGCAAGGATTAAAAATGCACGCTAGAAAATGCAAAGGTGAGGACGAGTTCTTAGAGTTTGCTTTCAAAAAGGAAGAGTACGTAGCAATGGATTTAGACCAGAACTACGAGGACCGGTCGAAAAGACCAAGTGTTAAGCAAATTCGagaaaatattgtaattgtgaTCAATATGTCCACAGCAATACCTTTCAACTTCTACAAGAACAAATTCAATTGTTTCTATTGCTCGAAGGACTTTCCGGATTCAGATTCCATGCGAGAACATACGGTAATGGAGCATCCAGTTTGTGATGTTAAACAGAAATGCATTAGAAAGTGTAGAGAGTCAGTAGCGTGCGTTAAAATAGACGTGTCCTCTTTGGCTTGCAAGGTCTGCTTTGAATCGATGACTGATTTGGATAACTTGCTCGATCATCTCATTATTAAACATAAAGCTAATTACGATAAATCAATAACTACTTGCTTGCAGCCCTACCGCCTCATAAAAGATCACATGGCTTGTCCCAATTGTCCAGGTGAAGTGTTTCGATTCTTCGGCACTTTGCTTAAGCATATGAACAAAACACACACTaacaacaatataatatgtgtatattGTGGAGAAACTTTTAGGCGTGATCAGAACTTGAGGGTACACATATGGAGGCATCATAGGGACGGCCGGTTCAAATGTAACATTTGCGATACAGAATGCAATATACCTTCTAGATTATACATGCATATGGCAAAAGTTCACGGCGTTAGAGCAGCCAAATGTCCGAAGTGTCCAGAACAGTTCGCAACTCAGTACTTAAGGCAAAAGCATTTAATTGAAATCCACAACTCTGGGCACAAGTGCACGTATTGTGGTAAATTATTTACTAGGAATTCATTTATGAAGGACCACGTGAGGAGGACGCATCTTAAAGAGAAGAACGTTGAATGCTCAATATGTAACATGAAGTTCTTCAACAACATCCTTCTAAGGCGGCACATGGTGAAGCACAGTGGCGAGAAGAACTTCTATTGCGATGTTTGTGGAGAGAGATTCTTTTGGCGGAAGAGTCTCAGAACACATATGGCTAGGCATAGCAAACATGTCAATCCTATACAAATTTAG
Protein Sequence
MEFDEIVVKESPGLCRCCLSEGCYKDLGSEYTWMNDNEVYADMLLECFDISITQHNDGPNGPNRLICEVCITRLRDACNFKKQVLESEKKFIDMVARGDFKPKMLIYQTQMKSEENVEVNIEDIEYLDDEMDFADDEPLKREDPSEPTVSKITVESLPVKGKRGRPRKNEVKTEKRIKLPKTEEKPKTSKAVAKDVTPRKYRGCESSSMRRRKNLQIIFNSTSIIPFKWRGKYLCFYCSKDISEYTELRKHTKSHGSCSIRDHSLKVLKGGQNMEIKIDVSDVTCEICSEPFPTLDEVLNHLYIKHKLEYDKGVEMAIEEYRLIDLSCLLCGEKFTYFGYLVSHVNSTHPKNCLICDKCNQKFNKKRDLFSHMKNYHREGGYQCEMCPQTFSSLNILRKHRNNRHLTRCNICHLKLPSAALKQKHIDLEHPDDGSLQCDNCDKEFHTKQGLKMHARKCKGEDEFLEFAFKKEEYVAMDLDQNYEDRSKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVMEHPVCDVKQKCIRKCRESVACVKIDVSSLACKVCFESMTDLDNLLDHLIIKHKANYDKSITTCLQPYRLIKDHMACPNCPGEVFRFFGTLLKHMNKTHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICDTECNIPSRLYMHMAKVHGVRAAKCPKCPEQFATQYLRQKHLIEIHNSGHKCTYCGKLFTRNSFMKDHVRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFYCDVCGERFFWRKSLRTHMARHSKHVNPIQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00013343;
90% Identity
iTF_01010621; iTF_01430141; iTF_00290919; iTF_00429259; iTF_00428374; iTF_00787891; iTF_01359091;
80% Identity
-