Dpor001775.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Deilephila porcellus
Gene Symbol
-
Assembly
GCA_905220455.1
Location
LR999971.1:17096688-17104405[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.059 4.4 8.4 2.1 1 23 235 257 235 257 0.96
2 16 0.038 2.8 9.0 0.0 2 23 286 308 285 308 0.94
3 16 0.0051 0.38 11.7 0.2 2 23 329 351 328 351 0.95
4 16 0.00021 0.016 16.0 2.6 2 23 357 379 356 379 0.95
5 16 0.00091 0.067 14.1 1.1 1 23 384 407 384 407 0.96
6 16 0.29 21 6.2 0.5 2 23 410 432 409 432 0.93
7 16 0.022 1.6 9.7 0.8 2 22 439 459 438 459 0.93
8 16 0.0029 0.21 12.5 0.6 1 23 520 543 520 543 0.93
9 16 0.32 23 6.1 0.1 3 23 572 593 570 593 0.92
10 16 0.035 2.6 9.1 0.2 3 23 617 639 615 639 0.94
11 16 0.00045 0.034 15.0 0.4 3 20 646 663 644 667 0.90
12 16 0.008 0.59 11.1 0.4 1 23 672 695 672 695 0.97
13 16 0.00071 0.053 14.4 0.3 2 23 701 723 701 723 0.94
14 16 3.5e-05 0.0026 18.5 4.9 1 23 727 750 727 750 0.97
15 16 0.00016 0.012 16.4 0.6 2 23 757 778 756 778 0.96
16 16 0.0091 0.67 10.9 2.6 1 23 784 806 784 806 0.97

Sequence Information

Coding Sequence
ATGGAGTTTGACGAGATTGTAGTGAAGGAGAGTCCCGGGCTATGCCGGTGCTGTCTCTCCGAAGGATGTTATAAAGATCTTGGCACGGAGTACACTTGGATGAACGACAATGAAGTTTATGCCGACATGCTGTTGGAATGCTTTGATATTAGCATAACACAACACAATGATGGTCCCAATGGGCCCAACAGGTTGATATGTGAAGTGTGCATCACAAGGTTGCGAGATGCCTGTAACTTTAAGAAGCAAGTTCTTGAGTCAGAGAAGAAGTTCATTGATATGGTCGGCCGGGGTGATTTCAGACCTAAAGTGTTGATATACCAGACACAGATGAAGTCAGAAGAAATTGTTGAAGAAATTCCTGCTGAGGAGGTGGAGTACCTTGAGGACGACAGTGACTTCAGAGATGATGAAATGCTGAAGCACGAAGACCCAACAGAGTCCACAGTGTCGGAGATAACAGTAGAACCGTTACCGGTGAAGGGCAAGCGCGGCCGGCCGCGGAAAAACGCCGACGTTAAGCCCGAGAAGCGCATCAAAGTCACCAAGTTGGAGGACAAAGCTAAGACTTCTAAAGCTGTCGCCAAAGATGTTATATCGAGAAAATACAAGGGCTGCGAATCATCGTCAATGCGCAGACGGAAAAACCTACAAATACTTTTCAACAGCACCTCGATCATACCGTTTAAGTGGCGCGGCAAGTACTTGTGTTTCTACTGCAGCAAAGATATGTCGGAGTACTCGGAGCTGAGGAAACACACCAAGTCGCACGGCAGTTGCTCCATCCGCGATCACTCGCTGAAGGTTCTAAAAGGTGGTCAGAATATGGAGATTAAGATCGACGTTTCCGAAGTCACCTGCGAGATTTGCAGCGAACCCTTCCCTACATTCGACGAGGTTTTAAATCATCTGTACATAAAACACAAACTTGAATACGACAGGGGAGTCGAAATGGCAATTGAAGAGTACAGGCTGGTTGATCTCAGCTGTTTGTTGTGCGGTGAAAAGTTTACCTATTTTGGATATTTAGTCTCGCACGTCAATAGTATTCATCCCAAGAATTGTCTCGTATGTGATAAGTGCAACCAAAAGTTTAATAAAAAACGTGACTTATTCTCTCATATGAAGAATTATCACAGGGAGGGTGGATATCAGTGCGAAATGTGCCCTCAGTCTTTTAGTTCTCTAAACATCTTACGGAAGCACCGAAATAATAGGCACCTTACTCGCTGCAATATATGTCATTTGAAGCTTCCGTCGGCGGCGCTGAAACAGAAGCATATTGAGTTGGAACATCCAGATGATGGTTCCTTACAGTGCGATAACTGTGCCAAAGAGTTTCATACAAAGCAAGGATTAAAAATGCACGCGAGGAAATGCAAAGGTGAAGACGAACTCTTTGAATTTGCATTCAAGAATGAAGAATATGTAGCCATGGATTTGGACCAGAACTATGTGGATCGATCCAAAAGACCCAGCGTGAAGCAGATTCGGGAAAATATTGTAATTGTAATAAATATGTCTACAGCAATACCTTTTAATTTTTACAAAAATAAGTTTAATTGTTTCTATTGCTCAAAAGATTTTCCCGACTCGGATTCAATGCGAGAACACACAGTCATGGAGCATCCAGTGTGTGATGTCAAACAGAAATGTATACGCAAATGTAGGGAGTCTGTGGCGTGCGTCAAAATTGACGTGTCTTCACTAGCTTGTAAGATATGTTTTGAGTCAATGACTGATTTGGATAGCTTGCTTGACCATCTTATCTTAAAACACGAAGCAAATTACGACAAATCTATTACAACTTGCCTTCAACCCTACCGCCTAATAAAAGATCACATGGCTTGTCCGAATTGTCCAGGCGAAGTATTTAGATTTTTCGGAACTTTGCTTAAACATATGAATAAAAAACACACCAATAATAACATAATTTGTGTGTATTGCGGAGAAACTTTTAGACGAGATCAAAACTTGAGGGTTCATATATGGAGACATCATAGGGACGGCCGGTTTAAATGTAACATCTGCGGAGCGGAATGCAATATTCCTTCACGATTGTACATGCACATGGCTAAAGCTCACGGCGTAAGAGCCGCCAAATGCCCGAAGTGCCCAGAACGATTTGCTACTCAATACTTGAGACAAAAGCATTTGATAGAAGTGCACGATTCCGGTCACAAATGCACGTATTGCGGTAAATTATTTACTAGGAACTCGTTTATGAGAGACCACATTAGAAGGACGCATCTCAAAGAAAAGAACGTTGAGTGCTCTATTTGTAACATGAAGTTTTTCAATAATATCCTTCTAAGACGTCACATGGTGAAGCATAGTGGTGAAAAGAACTTTCATTGTGATCTCTGTGGAGAAAGATTTTTTTGGCGGAAAAGTCTGAGAACCCACATGGCTAGGCATAGCAAACTTATTGATCCTATACAAATTTAG
Protein Sequence
MEFDEIVVKESPGLCRCCLSEGCYKDLGTEYTWMNDNEVYADMLLECFDISITQHNDGPNGPNRLICEVCITRLRDACNFKKQVLESEKKFIDMVGRGDFRPKVLIYQTQMKSEEIVEEIPAEEVEYLEDDSDFRDDEMLKHEDPTESTVSEITVEPLPVKGKRGRPRKNADVKPEKRIKVTKLEDKAKTSKAVAKDVISRKYKGCESSSMRRRKNLQILFNSTSIIPFKWRGKYLCFYCSKDMSEYSELRKHTKSHGSCSIRDHSLKVLKGGQNMEIKIDVSEVTCEICSEPFPTFDEVLNHLYIKHKLEYDRGVEMAIEEYRLVDLSCLLCGEKFTYFGYLVSHVNSIHPKNCLVCDKCNQKFNKKRDLFSHMKNYHREGGYQCEMCPQSFSSLNILRKHRNNRHLTRCNICHLKLPSAALKQKHIELEHPDDGSLQCDNCAKEFHTKQGLKMHARKCKGEDELFEFAFKNEEYVAMDLDQNYVDRSKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVMEHPVCDVKQKCIRKCRESVACVKIDVSSLACKICFESMTDLDSLLDHLILKHEANYDKSITTCLQPYRLIKDHMACPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKAHGVRAAKCPKCPERFATQYLRQKHLIEVHDSGHKCTYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDLCGERFFWRKSLRTHMARHSKLIDPIQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00013343;
90% Identity
iTF_00063808;
80% Identity
-