Tjap016240.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Theretra japonica
Gene Symbol
-
Assembly
GCA_033459515.1
Location
CM065948.1:17002590-17010708[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.063 4.1 8.4 2.1 1 23 236 258 236 258 0.96
2 16 0.04 2.6 9.0 0.0 2 23 287 309 286 309 0.94
3 16 0.0055 0.35 11.7 0.2 2 23 330 352 329 352 0.95
4 16 0.00023 0.015 16.0 2.6 2 23 358 380 357 380 0.95
5 16 0.00098 0.063 14.1 1.1 1 23 385 408 385 408 0.96
6 16 0.31 20 6.2 0.5 2 23 411 433 410 433 0.93
7 16 0.0013 0.081 13.7 1.3 2 22 440 460 439 460 0.93
8 16 0.0031 0.2 12.5 0.6 1 23 521 544 521 544 0.93
9 16 0.12 7.4 7.5 0.1 3 23 573 594 571 594 0.93
10 16 0.038 2.4 9.1 0.2 3 23 618 640 616 640 0.94
11 16 0.00049 0.031 15.0 0.4 3 20 647 664 645 668 0.90
12 16 0.0086 0.55 11.1 0.4 1 23 673 696 673 696 0.97
13 16 0.00077 0.049 14.4 0.3 2 23 702 724 702 724 0.94
14 16 3.8e-05 0.0024 18.5 4.9 1 23 728 751 728 751 0.97
15 16 0.00017 0.011 16.4 0.6 2 23 758 779 757 779 0.96
16 16 0.02 1.3 9.9 3.7 1 23 785 807 785 807 0.97

Sequence Information

Coding Sequence
ATGGAGTTTGACGAGATTGTAGTGAAGGAGAGCCCTGGGTTGTGCCGGTGCTGTCTCTCTGAAGGATGTTATAAAGATCTTGGTACGGAGTACACTTGGATGAACGACAATGAAGTTTATGCCGACATGCTGTTGGAATGCTTTGATATTAGCATAACACAACACAATGATGGTCCTAACGGGCCCAACAGGTTGATATGTGAAGTGTGCATCACAAGGTTGAGAGATGCCTGCAACTTCAAGAAGCAGGTGCTTGAGTCGGAGAAGAAGTTCATTGATATGGTTGGCCGGGGTGATTTCAGACCTAAAGtgCTGATATATCAGACTCAGATGAAGTCGGAAGACATTGTGGAAGAAATTCCTGTTGAGGAGGTGGAGTACCTTGAGGATGAAGACACAGACTTCAGAGATGATGAAATGCTGAAACACGAAGCCCCAACAGAGTCCACAGTGACGGAGATAACAATAGAACCCTTACCAGTGAAGGGCAAGCGCGGCCGGCCGCGGAAAAACGCTGATGTTAAGCCAGAGAAGCGCATTAAAGTCCCCAAGGTGGAGGACAAAGCCAAGACCTCTAAAGCTGTCGCCAAAGATGTTATATCGAGAAAATACAAGGGCTGTGAATCATCATCAATGCGCAGACGGAAAAACCTACAAATACTTTTCAACAGCACCTCGATCATACCGTTTAAGTGGCGCGGCAAGTACTTGTGTTTCTACTGCAGCAAAGATATGTCGGAGTACTCGGAGCTTAGGAAACACACCAAGTCGCACGGCAGTTGCTCCATCCGTGACCATTCCCTGAAGGTTCTAAAAGGCGGTCAGAACATGGAGATTAAGATCGACGTTTCAGACGTCACTTGCGAGATTTGCAGCGAACCCTTCCCTACATTCGACGAGGTTTTAAATCATTTGTACATAAAACACAAACTCGAATACGACAGGGGAGTCGAAATGGCGATCGAAGAGTACAGGCTGACTGATCTTAGCTGTTTGTTGTGCGGTGAAAAGTTTACCTACTTTGGATATTTGGTCTCGCACGTCAATAGTATTCATCCTAAGAATTGTCTCGTATGTGATAAGTGCAatcaaaagtttaataaaaaacgtGACCTGTTCTCTCATATGAAGAATTATCACAGGGAAGGTGGATATCAGTGCGAAATGTGCCCCCAGTCTTTTAGTTCTCTCAACATCTTAAGGAAGCACAGAAATAATAGGCATCTTACTCGATGCAATATATGTCATTTGAAGCTTCCTTCGGCGGCGCTGAAACAGAAGCACATTGAGTTGGAACATCCAGACGACGGTTCCCTACAGTGCAACAACTGTGACAAAGAGTTTCATACAAAGCAAGGATTAAAAATGCACGCGAGGAAATGCAAAGGTGAAGACGAACTCTTGGAATTTGCATTCAAGAATGAAGAATATGTAGCCATGGATTTGGATCAGAATTATGTGGATCGGTCAAAAAGACCCAGCGTGAAGCAGATTCgggaaaatattgtaattgtaataaatatgtctaCGGCTATACCCTTTAATTTTTACAAGAAcaagtttaattgtttttattgctcaaAGGATTTTCCCGATTCGGATTCAATGCGAGAACATACAGTCATGGAGCATCCAGTGTGTGATGTCAAACAGAAATGTATACGCAAATGTAGAGAGTCTGTGGCGTGCGTCAAAATTGACATATCTTCACTAGCTTGTAAGATATGTTTTGAGTCAATGACTGATTTGGATAACTTGCTTGACCATCTTATCCTAAAACACGAAGCAAATTACGACAAATCTATTACAACTTGCCTACAACCGTACCGCCTCATAAAAGATCACATGGCTTGCCCGAATTGTCCAGGCGAAGTATTTAGATTTTTCGGAACTTTGCTTAAacatatgaataaaaaacacaccaataataacataatttgtgTATATTGCGGAGAAACTTTTAGACGAGATCAAAACTTGAGGGTACACATATGGAGACATCATAGGGACGGCCGGTTTAAATGTAACATTTGCGGAGCGGAATGCAATATTCCTTCACGATTGTACATGCACATGGCTAAAGCTCACGGCGTTAGAGCCGCCAAATGTCCGAAGTGCCCAGAACGATTCGCCACTCAATACTTGAGACAAAAGCATTTGATAGAAGTGCACGACTCCGGTCATAAATGCACGTATTGCGGTAAATTATTTACTAGGAACTCGTTTATGAGAGACCACATTAGAAGGACGCATCTCAAAGAAAAGAACGTTGAGTGTTCTATTTGTAACATGAAGTTTTTCAATAATATCCTTTTGAGACGTCACATGGTGAAGCATAGTGGCGAAAAGAACTTCCATTGTGATCTCTGCGGCGAAAGATTTTTTTGGCGGAAAAGTCTCAGAACCCACATGACTCGGCATAGCAAACTTGTCAATCCTATACAGATTTAG
Protein Sequence
MEFDEIVVKESPGLCRCCLSEGCYKDLGTEYTWMNDNEVYADMLLECFDISITQHNDGPNGPNRLICEVCITRLRDACNFKKQVLESEKKFIDMVGRGDFRPKVLIYQTQMKSEDIVEEIPVEEVEYLEDEDTDFRDDEMLKHEAPTESTVTEITIEPLPVKGKRGRPRKNADVKPEKRIKVPKVEDKAKTSKAVAKDVISRKYKGCESSSMRRRKNLQILFNSTSIIPFKWRGKYLCFYCSKDMSEYSELRKHTKSHGSCSIRDHSLKVLKGGQNMEIKIDVSDVTCEICSEPFPTFDEVLNHLYIKHKLEYDRGVEMAIEEYRLTDLSCLLCGEKFTYFGYLVSHVNSIHPKNCLVCDKCNQKFNKKRDLFSHMKNYHREGGYQCEMCPQSFSSLNILRKHRNNRHLTRCNICHLKLPSAALKQKHIELEHPDDGSLQCNNCDKEFHTKQGLKMHARKCKGEDELLEFAFKNEEYVAMDLDQNYVDRSKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVMEHPVCDVKQKCIRKCRESVACVKIDISSLACKICFESMTDLDNLLDHLILKHEANYDKSITTCLQPYRLIKDHMACPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKAHGVRAAKCPKCPERFATQYLRQKHLIEVHDSGHKCTYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDLCGERFFWRKSLRTHMTRHSKLVNPIQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00013343;
90% Identity
iTF_00063808;
80% Identity
-