Ajug018243.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- sip1
- Assembly
- GCA_949126905.1
- Location
- OX421387.1:3970226-3984948[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-58 4.6e-54 184.3 1.0 4 275 369 622 366 622 0.96 2 2 0.41 4.9e+03 -2.8 0.0 73 103 634 666 626 678 0.47
Sequence Information
- Coding Sequence
- ATGTCTGACGACGAGGTTATACGTTTTGAAATCACGGACTATGATTTAGACAATGAATTTAATCCAAATAGGAATAGAAGAGCTAAAAAGGAACAGCAGATTTATGGTGTGTGGGCTAAAGACAGTGACGAGGAAGACAATGAAGACAACATCAGGCAGAGGACACGTAAACCCAAAGATTTCTCAGCACCCATTGGTTTTGTGGCTGGAGGCGTTCAACAAGCTGGCAAGAAGAAAGAGGAGAAgaaagAAATAGAGCCAGCCGCAGCATCCACATCTCGTCCAAAGTTTGCAGCAGACAGTTCAGATGAGGAGCAGCTAGAAGAACCGGATGAGAGTGAGACAGCAGGGATCCGGAGACAGGGTCAGGGCATGCGCCCGCCCAACCTTGGTGGGAGTGTTGGGACATGGGAGAAGCACACTAAGGGCATCGGTGCCAAGCTGTTGCTGCAGATGGGGTACCAACCAGGGAAAGGTTTAGGTAAAGATCTTCAAGGTATATCGGCGCCAGTTGAAGCTACCATCAGGAAAGGTCGAGGAGCTATTGGTGCTTATGGACCTGAAAAATCAAcaCAAAAAgcaaagaaagaagaagaacggcgtttgaaagaaaaagaagagGAAGATAAAGACAAGAAGGAGAAAACATATAATTGGAAGAAGTCGCACAAAGGCCGATACTTCTACCGTGATGCAGCCGACGTCATACAAGAGGGTAAACCCACGATGCATACTATAGCCAGCAGTTCGCTGTCACAGGTGCCTGTGATCGACATGACGGGCAAAGAGAAACGCGTACTGAGCGGTTACTCGGCGCTGcgagccgccgcgccgcgctacGAGCACGAGCCGCGCCGCAAGTGCGACAACTTCGCCGCGCCACACCTGCTGCACAACCTAGAGCTGATGGTGGACTGTTGTGAACAGGACATAATCCAAAACGCACGAGAGCTGCAACAAGCGGAAGATGAAATAGTGGTTCTTGAAAGGGATTTAGAAGAATGTAATATCAAGCTGAAAGGTCACGATGATGTGATCTCCAAAGTGGAGGTCATATTGGAGAAGGTCGAGGAACTGAACAAACCAGAGGTGTCATTGGAAACTGCTTATGAAGTTTTATCCGACTTGAAGGAATCCTTCCCACTAGAATACGAGATGTTCGGTCTAGGCACGATAGCAGGGAACATCATTAGTCCGCTATTCAGTGCTATGTTAGCAACATGGGATCCACTGCAGGCACCTGAAGAGCCGATACCGACCTTCCTCAAGTGGAGGAAGCTGCTGACCGATGAGGCATACAACAGCTTGATATGGCAACATTATGTACAGCATATTAATAATGCTGCTGAGGTATGGAATCCCCGCATCCCGGCACCGATGGTCCGCGCTCTGACATCGTGGTCCGACGCGTGTCCCGATTGGGTGTTATCTTCGTGTGCATCGCGGTACATAGTGCCTCGTGTGCTGTCTGCTGTGAGAGTGTGGGACCCAACGAGCGACGCACAACCCTTGCACCAGTGGGTGCTGCCGTGGCATGATATAGCAGGCGACGCGTTGGCGACCGGCGTGTACCCGTTGATCCGGTCTCGTCTGGCGGCGGCGCTGGCGGGCTGGCACCCGGCGGACGCGTCGGCGCGCGGCGTGCTGGGCGCGTGGCGGCGCGCGTGGGGCGGCGCGCTCACCGCCGTGCTGCACCACCACGTGGCGCCCAAGCTCGAGCACTGTCTGCAGCACGCGCCCGTGCACCTCGTCGGAGGAGACAACACTGCATGGCAATGGTGCGTGGATTGGTTGGACTTGCTGGGTGCACCGACAATAGCGGCCATCGCCAGTAGAGCGTTGTTACCGAGGTGGTTAGCCGCCTTAGCCGCTTGGTTGAATACAAATCCTACGCACGCGACTGTACTCAACTCTTACACTGATTTTAAGAAAATGTTTCCCGAGGAAGTGCTCAAAGAGCCAGCAGTACGCGACGCGTTCCGTAAAGCGTTAGACATGATGAACCGAAGCACCGATTTGGAAACGGTCGAGCCTCCTCCACCACCACGCTTCACTCTCGACTCGAAAGAAACTTCTAGAATAGCAGACGTTCTAGCCTCCGCTAGTCAACAGAAGAGTTTCTCAGAGTTACTGGAGTCTAGATGCATAGATAAGGGAATAACCTTCGTGCCTATAGCGGGGAAGTCAAGAGAAGGCAGGCCGATATACAAGATTGGCAATATGCAGTGCTATGTCATAAGAAATGTTATTATGTACTCTGATGACAGCGGGAGAAATTTCTTACctataagtatagataagttGTTGCAGTTGGTTGAAGATTAA
- Protein Sequence
- MSDDEVIRFEITDYDLDNEFNPNRNRRAKKEQQIYGVWAKDSDEEDNEDNIRQRTRKPKDFSAPIGFVAGGVQQAGKKKEEKKEIEPAAASTSRPKFAADSSDEEQLEEPDESETAGIRRQGQGMRPPNLGGSVGTWEKHTKGIGAKLLLQMGYQPGKGLGKDLQGISAPVEATIRKGRGAIGAYGPEKSTQKAKKEEERRLKEKEEEDKDKKEKTYNWKKSHKGRYFYRDAADVIQEGKPTMHTIASSSLSQVPVIDMTGKEKRVLSGYSALRAAAPRYEHEPRRKCDNFAAPHLLHNLELMVDCCEQDIIQNARELQQAEDEIVVLERDLEECNIKLKGHDDVISKVEVILEKVEELNKPEVSLETAYEVLSDLKESFPLEYEMFGLGTIAGNIISPLFSAMLATWDPLQAPEEPIPTFLKWRKLLTDEAYNSLIWQHYVQHINNAAEVWNPRIPAPMVRALTSWSDACPDWVLSSCASRYIVPRVLSAVRVWDPTSDAQPLHQWVLPWHDIAGDALATGVYPLIRSRLAAALAGWHPADASARGVLGAWRRAWGGALTAVLHHHVAPKLEHCLQHAPVHLVGGDNTAWQWCVDWLDLLGAPTIAAIASRALLPRWLAALAAWLNTNPTHATVLNSYTDFKKMFPEEVLKEPAVRDAFRKALDMMNRSTDLETVEPPPPPRFTLDSKETSRIADVLASASQQKSFSELLESRCIDKGITFVPIAGKSREGRPIYKIGNMQCYVIRNVIMYSDDSGRNFLPISIDKLLQLVED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00429029;
- 90% Identity
- iTF_01429953;
- 80% Identity
- -