Aequ017682.1
Basic Information
- Insect
- Ametastegia equiseti
- Gene Symbol
- -
- Assembly
- GCA_963989295.1
- Location
- OZ022396.1:15098895-15102578[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0038 0.45 11.8 0.5 6 21 271 286 268 287 0.92 2 13 0.018 2.1 9.7 1.4 1 23 293 315 293 316 0.94 3 13 0.0039 0.45 11.8 0.9 2 23 329 351 329 351 0.96 4 13 0.091 11 7.5 0.9 3 23 365 385 365 385 0.92 5 13 1e-07 1.2e-05 26.2 1.5 2 23 417 438 416 438 0.97 6 13 0.0075 0.88 10.9 0.4 1 23 443 466 443 466 0.91 7 13 2.4 2.9e+02 3.0 1.6 2 23 550 571 550 571 0.96 8 13 7.2e-05 0.0084 17.2 2.1 1 23 580 602 580 602 0.97 9 13 0.0019 0.22 12.8 3.5 1 23 611 633 611 633 0.97 10 13 0.087 10 7.5 4.5 1 21 639 659 639 660 0.94 11 13 0.00012 0.014 16.5 1.7 1 23 690 712 690 712 0.99 12 13 0.19 22 6.5 0.0 1 23 782 805 782 805 0.97 13 13 1.6e-06 0.00019 22.4 3.7 1 23 810 833 810 833 0.97
Sequence Information
- Coding Sequence
- ATGACTACCTTGACAGGAGACTGGAATAATGCGTGTAGACTTTGTTCGGAAGAGAAGGCAGAAATGTTACCTATATTTGGAGACGAAGGAACGCAGAGAAAAGTTACTCAGAAAATGAGGGCCTGCTTTCCGGTAATGGTTTACAAAACTGACCCACTGCCAAAACAGATATGCCAATTCTGCGCTGCCAGATTAGACGACGCTTACGAATTTAGAGAGCGTTGTTTAGGCGTCTACAAAGCCATGCACGTACAACTTTTGGCATCTAAACACTCGGAAACTGTTCAAATCTTTTTAGAAGCTATGAAGAATTCTCCAGATCCATGCCAGGCGCAACTTTGCAAAGAGAAAGCACGAGCTCCGCCGCCGCTTGTTCCACTGCCAGCGTCTTTGCCAGCAGAAAAATCCTCTTGTAGTTCTACAATTTTGGCAAAGAAGCAACAGGATTCCAGTTTGGCTAAAGAACCATCCCTCGTGGAATTACCCTGCGAAGTACAGATTAAAGAGGAGCCAATGGAACTGGGTGGAGGAAGTAGCGTCTCTATTTTAGATTCTAAGAGCATAACAGCTGAGGAATTATTGGAGTCAATTCGTAAAGAGAGAATGGAGCTGTCGCTGGAGGAAGAAAATTATAGTTTGGGTAGCAGGAAGGAGAGGAGATCATTCAAGAATGATAAAAGGCCGGCTAACGTAGGAGGAAACGGAAGCACCAGTATTTTGGAACAGGTTTTGACCGGCAGCTTGAAGATAAATGACCGCAAAGAAACCAAACCAAAGTTTAAACTTAGCTCGAAATGGTGGTGCGCTCCGTGCAACAGATACTATAGGACTAAGGACAGCCTGAGGAAACACATGCGGCTCTTCTGTCCGAGAAGATACAAatgcaaaaaatgttcaagCGTGTTTCAGTCCGTCGAAGAACTGGCAAAACACGAGGGATCCCACCATTTAAAAGTTACCTTGAACTTTGACGAGTGCGTAAACGAGTGCGATCAGTGCGACAGAGAGTTTGTCAGCTGGGAAATACTCAGGCATCACAGACAGAGGGATCATCAGCCAAAATCTGCAGCTGGAACTGATAGTAACACTTGGTGTTCGCCCTGCAATAgATTCTTTCCAACGCTTGATTCGTACCAAAATCATAAGCAACTTCATCAGCCGGATTCAGCCTCACTGTTACCTGCTACTACTGGGGGAGCTGAACCTTTATTCAATAAGAATTCTTATCCAGAAAATATGAAGTCACTTACCTGTCCGACCTGCGGGAAGGTTTGTACGCAACAAAGTGCATTGTCTAATCACATGCGAACACACGAGCcaaaaaaacacaaatgtGAAATTTGCGGTCGCTCGTTTGGCCTTTTTATTCGATTGGCCGCACACAGGCTAAGCGAACATAATCAACAGCCAATTATGTCCCCTGTTATGACCAGCGTAGAACAAGAAGAAGCTTTAAACGCCGAGAGGGAAGCTCGAGAAGCTAGGGAAGCTAGGGATGATCCAGAAACTCTAACTGGAATAGGCAGCAATAAAAGTTACGGTATAGCTAAGGAATCGGATGACGAAGATTCTTTTATGGACAGCTTGGCTCGCGCCAGTATGTTATCTGGTAAAAAGGCGAACGTCGGTACATCAAAGAACGTTGCTCGCTGTGGTATTTGCTTGCAGTGGTTCAACGATCACACGACAATGCTGACTCATTTGCAAACACATTCTGAAAGTTACGTTTACAAAAGCTTCAGCTGCCGTGTCTGTAAAAAAACTTTTAAAGAGAAATGGCAGCTCCTTCGTCACGAGaatTCTCACAAAAGAGCGGGAAATGCTGCAATCTACACTTGTTCAACTTgtaaaaaaacattcaaagaCAAAGCGCAGCACAAAGCTCACGAGGCGACACATGTTGTGGACAAAACCTTCCACTGTCCAAGGTGcaataaaatattcttcaaggagTTTTCACTTCTCACACATCAGTGCAGTAGCTCCGGGAAACAGACATTTGGAAAACGCGGAGCATCTGGCAAGGTTTCCGCCAAGGCACCTTCGTTCTTTGgctcgttaaaaaaatacaagtgCTCTAAGTGCAATGcgattttcaacaattctCAATCCAGAAATTCGCATATGAGGGTACACACCCAGGCGCATGCAATGTTGCAAGtgcgaaaaaaagaattgaaaaaagaactaGAACTTTCAAAAGCAATGCCAAAACTAAAGCCTGAGGAAGCTTCGCCCGGTACATCTGTACCTCCTAAAATCGAACCTTTAGCTGAAGTTAAAGTCGAGGATTCTCCTACAACACCTACCCTCAAACGTACCCTTATCAGGACTGCTGGAGGATATCGTTGTGGAGTTTGCCAGTCACCGTTTGTCCTGCGAGAATTAGCTGTGGCGCATCTGAGATCAGCGCATCCCGCGGCAACGTTTACCTGCCCACATTGCAAGAAGCAATTTTCAACAAGATATACACTGACTCGTCACGTAGAGACGGTACATCCTAACGAATCCGAGAAATAA
- Protein Sequence
- MTTLTGDWNNACRLCSEEKAEMLPIFGDEGTQRKVTQKMRACFPVMVYKTDPLPKQICQFCAARLDDAYEFRERCLGVYKAMHVQLLASKHSETVQIFLEAMKNSPDPCQAQLCKEKARAPPPLVPLPASLPAEKSSCSSTILAKKQQDSSLAKEPSLVELPCEVQIKEEPMELGGGSSVSILDSKSITAEELLESIRKERMELSLEEENYSLGSRKERRSFKNDKRPANVGGNGSTSILEQVLTGSLKINDRKETKPKFKLSSKWWCAPCNRYYRTKDSLRKHMRLFCPRRYKCKKCSSVFQSVEELAKHEGSHHLKVTLNFDECVNECDQCDREFVSWEILRHHRQRDHQPKSAAGTDSNTWCSPCNRFFPTLDSYQNHKQLHQPDSASLLPATTGGAEPLFNKNSYPENMKSLTCPTCGKVCTQQSALSNHMRTHEPKKHKCEICGRSFGLFIRLAAHRLSEHNQQPIMSPVMTSVEQEEALNAEREAREAREARDDPETLTGIGSNKSYGIAKESDDEDSFMDSLARASMLSGKKANVGTSKNVARCGICLQWFNDHTTMLTHLQTHSESYVYKSFSCRVCKKTFKEKWQLLRHENSHKRAGNAAIYTCSTCKKTFKDKAQHKAHEATHVVDKTFHCPRCNKIFFKEFSLLTHQCSSSGKQTFGKRGASGKVSAKAPSFFGSLKKYKCSKCNAIFNNSQSRNSHMRVHTQAHAMLQVRKKELKKELELSKAMPKLKPEEASPGTSVPPKIEPLAEVKVEDSPTTPTLKRTLIRTAGGYRCGVCQSPFVLRELAVAHLRSAHPAATFTCPHCKKQFSTRYTLTRHVETVHPNESEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00939859; iTF_00939010; iTF_01412597; iTF_01303698; iTF_01414451; iTF_01411803; iTF_01413664;
- 90% Identity
- -
- 80% Identity
- -