Malb022569.1
Basic Information
- Insect
- Macrophya alboannulata
- Gene Symbol
- -
- Assembly
- GCA_949628255.1
- Location
- OX451210.1:20134991-20138221[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0061 0.76 11.2 0.5 6 21 249 264 246 265 0.92 2 13 0.0049 0.62 11.5 1.2 1 23 271 293 271 294 0.94 3 13 0.0039 0.49 11.8 0.9 2 23 307 329 307 329 0.96 4 13 0.43 55 5.4 0.6 3 23 343 363 343 363 0.92 5 13 1.5e-07 1.9e-05 25.7 1.4 2 23 395 416 394 416 0.97 6 13 0.0076 0.96 10.9 0.4 1 23 421 444 421 444 0.91 7 13 2.5 3.1e+02 3.0 1.6 2 23 526 547 526 547 0.96 8 13 0.00036 0.046 15.1 2.2 1 23 556 578 556 578 0.96 9 13 0.0019 0.24 12.8 3.5 1 23 587 609 587 609 0.97 10 13 0.024 3.1 9.3 3.3 1 21 615 635 615 636 0.95 11 13 5.2e-05 0.0066 17.7 2.4 1 23 665 687 665 687 0.99 12 13 0.19 24 6.5 0.0 1 23 758 781 758 781 0.97 13 13 1.3e-05 0.0016 19.7 3.1 1 23 786 809 786 809 0.96
Sequence Information
- Coding Sequence
- atgactacCATGAAACGAGATTGGAATAAAGCCTGCAGACTTTGTTCAGAAGAAAAGGCAGAGATGTTACCAATATTTGGTGTTGAAGGAACGCAGAGAAAGGTTCCTCAAAAAATGAGAGCTTGTTTTCCAGTAATGGTTTATAAAACAGATCCTTTGCCAAAACAGATATGTCAATTCTGTGCTGCAAGATTAGACGATGCTTTTGAGTTCAGAGAGCATTGTCTAGGTGTTTATAAGACAATGCATCTACAGCTATTGGCTACCAAGGATTCAGAAactgttcaaatatttttacaagCAATGAAAAATTCGCCAGATCCATGTCAGgCACAACTCTGCAAAGAAAAATCACGAGCCCCTCCTCCATTGGTTCCTTTACCGGCTTCTTTGCCCTTGACTAAATCAACCTATTCTTTAATTCCGACTGAAGACCAGGATTCTAACGTTAAAAGAGAATCTTTGGTAGAACTTCCTTGCGAAGTACAGATCAAAGAAGAGCCAATGGATTTGGTAGATGGAAACCGGTCCGTTTTAAATTCTGAGAATATAACGGCTCAGGGATTGTTAAACTCATTTCGGAATGAGAGAATGGATATTGATACTAGGCTGGGTAATGCCTCTAGGAATAGTAACGGAAATACCAGTATTCTGGAACAAGTTTTGACAGGAAGCTTGACGATAAATGATCGTAAAGAAGCTAAACCAAAATTTAAACTTAGCTCTAAATGGTGGTGTGCGCCATGCAACAGATACTATAGaaCAAAAGAAAGCCTTCGAAAGCACATGCGGCTATTCTGCCCACGGAGATATAAGTGCAAAAAATGTACAAGCGTATTTGAAACTGTAGAAGAACTTGCCAAACACGAAGGATCTCATCATTTAAAAGTTAcattaaattttgatgaatgtgtTAACGAGTGTGATCAATGCGATAGAGAATTCGTCAGCTGGGAAATACTCAGACATCATAGACAGAGAGATCATCAGAAAAAATCGACGACACCAATAGATACAAACACTTGGTGTTCGCCCTGCAATAGattttttccaaCGCTTGATTTATACCTAAATCATAAGCAACTGCATCAGCCAGATTTGGCATCTTTATTACCTGCGAGTAACATGAAAACGGAAGATTCATTAAATAAGAATccttatatagaaaatatgaaGTTGCTGATGTGTCCTACTTGTGGAAAGgTTTGTACGCAGCAAAGTGCTTTGTCAAATCACATGCGAACACATGAGCCAAAAAAACACAAATGTGAAATTTGTGGTCGATCTTTTGGTCTTTTTATTCGATTGGCAGCGCACAGACTTAGCGAACATAATCAACAGCCAATTATGTCTCCTGTTATGACCAGCGTGGAACAAGAAGAAGCATTGAACGCTGAGAGAGAAGCTCGAGAAGCCAGAGAAGCTGTGGAAGTTGGAGAAACTGTAACTGGTATAGGCAGCAGTAGAAGCTACACTAAGGAATCTGACGACGAAGACGCGTTCATGGACAGTTTGGCCCATACTAGTATGACATCTGGTAAAAACGCGAATGTTAGTACATCTAAAAACGTTGCACGTTGCGGTATCTGCTTGCAATGGTTCAACGATCACACTACCATGCTGACTCATCTGCAAACCCATTCAGAGAGTTACGTTTACAAAAGTTTCAATTGCCGTACCTGTAAAAAAACGTTTAAAGAAAAATGGCAGCTACTTCGTCACGAgatttccCACAAGCGAGCAGCTAACGCGGTAATCTATACTTGTTCAACGtgcaaaaaaacttttaaagaCAAAGCACAGCACAAGGCACACGAGGCTACTCATGTTGTAGACAAAACTTATCACTGTCCAAGATGCAACAAGATATTTTTCAAGGAGTTCTCTCTGCTTGCACATCAGTGCAGCTCTGGAAATAAAACATTTGGAAAACGTGGGGCGAACAGTAAGGCTTCTGCGAAAGCAGCTATGCCATTTGGTGCTTTCAAGAAGTATAAGTGCTCCAAGTGCAATGCTACCTTCAATAATTCTCAATCCAGAAATTCTCACATGAGGGTACACACACAAGCGCATGCAATGCTgcaaatacgaaaaaaagaactaaaaaGAGAATTAGAAATGTCGAAAGCTATGCCAAAATTACAACCAGAAGACGATTCACCAGGTACATCAGTTCCTGCTCAAAAAGAGTCTTTAGCTGAGGTGAAAATTGAGGATCCTCCTGCCACTCCGCCTGCCCTTAAACGTACCTTGATAAGGACTGCTGGAGGatatcGTTGCGGAGTTTGTCAGTCACCGTTTGTCCTTAGAGAATTAGCAGTGGCACATTTGAGATCAGCACATCCTGCGGCAACGTTTAACTGTCCACACTGCAAGAAGTTGTTTTCAACCCGTTACACGTTAACACGTCATGTTGAGACGGTCCACCCGAACGAATCTGAGAAATAA
- Protein Sequence
- MTTMKRDWNKACRLCSEEKAEMLPIFGVEGTQRKVPQKMRACFPVMVYKTDPLPKQICQFCAARLDDAFEFREHCLGVYKTMHLQLLATKDSETVQIFLQAMKNSPDPCQAQLCKEKSRAPPPLVPLPASLPLTKSTYSLIPTEDQDSNVKRESLVELPCEVQIKEEPMDLVDGNRSVLNSENITAQGLLNSFRNERMDIDTRLGNASRNSNGNTSILEQVLTGSLTINDRKEAKPKFKLSSKWWCAPCNRYYRTKESLRKHMRLFCPRRYKCKKCTSVFETVEELAKHEGSHHLKVTLNFDECVNECDQCDREFVSWEILRHHRQRDHQKKSTTPIDTNTWCSPCNRFFPTLDLYLNHKQLHQPDLASLLPASNMKTEDSLNKNPYIENMKLLMCPTCGKVCTQQSALSNHMRTHEPKKHKCEICGRSFGLFIRLAAHRLSEHNQQPIMSPVMTSVEQEEALNAEREAREAREAVEVGETVTGIGSSRSYTKESDDEDAFMDSLAHTSMTSGKNANVSTSKNVARCGICLQWFNDHTTMLTHLQTHSESYVYKSFNCRTCKKTFKEKWQLLRHEISHKRAANAVIYTCSTCKKTFKDKAQHKAHEATHVVDKTYHCPRCNKIFFKEFSLLAHQCSSGNKTFGKRGANSKASAKAAMPFGAFKKYKCSKCNATFNNSQSRNSHMRVHTQAHAMLQIRKKELKRELEMSKAMPKLQPEDDSPGTSVPAQKESLAEVKIEDPPATPPALKRTLIRTAGGYRCGVCQSPFVLRELAVAHLRSAHPAATFNCPHCKKLFSTRYTLTRHVETVHPNESEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00060600;
- 90% Identity
- iTF_01411803;
- 80% Identity
- -