Rchl002032.1
Basic Information
- Insect
- Rhogogaster chlorosoma
- Gene Symbol
- -
- Assembly
- GCA_944452905.1
- Location
- CALYCC010000006.1:3236265-3239517[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0052 0.79 11.2 0.5 6 21 243 258 240 259 0.92 2 13 0.0076 1.2 10.7 1.2 1 23 265 287 265 288 0.94 3 13 0.00036 0.055 14.9 0.9 2 23 301 323 301 323 0.96 4 13 0.19 29 6.3 0.7 3 23 337 357 337 357 0.92 5 13 1.3e-07 2e-05 25.7 1.4 2 23 389 410 388 410 0.97 6 13 0.011 1.8 10.1 0.5 1 23 415 438 415 438 0.87 7 13 2.1 3.2e+02 3.0 1.6 2 23 520 541 520 541 0.96 8 13 0.00014 0.021 16.2 1.5 1 23 550 572 550 572 0.96 9 13 0.0028 0.42 12.1 3.1 1 23 581 603 581 603 0.96 10 13 0.021 3.2 9.3 3.3 1 21 609 629 609 630 0.95 11 13 4.5e-05 0.0069 17.7 2.4 1 23 659 681 659 681 0.99 12 13 0.16 25 6.5 0.0 1 23 752 775 752 775 0.97 13 13 4.2e-06 0.00065 20.9 2.3 3 23 782 803 780 803 0.95
Sequence Information
- Coding Sequence
- ATGACTACGATGAAACAGGATTGGGATAAAGCCTGCAGACTTTGTTCAGAAGAAAAAGCAGAGATGTTGCCAATATTTGGTGTGGAAGGAACGCAGAGGAAAGTAACACAGAAAATGAGAGCCTGTTTCCCTGTAATGGTGTACAAAACTGATCCCTTGCCAAAACAGATATGTCAATTCTGTGCGGCGAGATTGGACGATGCTTACGAGTTCAGAGAACGTTGTCTGGGAGTGTACAAAACCATGCATATTCAACTGTTGGCTTCAAAAGAGTCAGAAACTGTTCAAATATTTTTACAAGCTATGAAAAACTCCCCGGATCCATGCCAGGCGCAACTCTGCAAAGAGAAAGCCCGAGCTCCTCCCCCGCTGGTTCCTTTGCCGGCTTCTTTGCCCTCAAATAAATCCTTGGCTCCTGTTATCCCGAGTAAAAAACAGGATTCTAACGTCGCCAGAGAATCTTTGGTCGAACTTCCATGCGAAGTACAGATCAAAGAAGAACCGATGGACTTGGTAGACGGAACCCGGTCTATTATACAATCAGGAAGTATAACTGCCGAGGAATTGTTCAACTCCGTTCGTAACGAGAGAATGGAAATGAACTCGAGAAACGGTAACGGAAGCACCAGTATCCTTGAACAAGTTTTGACTGGAAACTTGAAGATAAATGACCGCAAAGAACCAAAACCAAAATTCAAACTTAGCTCTAAATGGTGGTGTGCTCCTTGCAATAGATACTATAGAACAAAAGAGAGCCTGCGAAAGCACATGCGGCTTTTCTGCCCGAGGAGATACAGGTGCAAAAAATGTACAAGCGTTTTTCCAACGGTCCAAGAACTGGCCAAACACGAAGGGTCTCATCATCTAAAAGTTACCTTAAACTTTGACGAATGTGTTAACGAGTGCGATCAGTGCGACAGAGAATTTGTCAGCTGGGAAGTACTCAGGCATCATAGGCAGAGAGATCATCAGCAAAAACCTGCGGCTGGAACTGATACAAACACTTGGTGTTCGCCCTGTAATAGATTTTTTCCCACGCTTGAATTGTACCAAAATCACAAGCAACTTCATCAGCCAGATTTGGCCGCTATATTACCTGCGGCCAACGAGCGAGCCGAAAACTTATTGAATAAGAATCATTACGTGGAAAATATGAAGCTGTTAATGTGTCCGACCTGCGGAAAGGTTTGTACGCAGCAAAGCGCTTTATCCAACCACATGCGAACACATGAGCCAAAAAAACACAAATGTGAAATTTGCGGGCGATCATTTGGCCTCTTCATTCGATTGGCCGCTCATAAACTCAGCGAACATAATCAGCAGCCAATTATGTCTCCGGTTATGACCAGCGTCGAACAAGAAGAAGCACTGAACGCTGAGAGAGAAGCTCGAGAAGCCAGGGAGGCTGGAGAAGTAGAAGAAACTGCAACTGGTGGAGGGAGCAACCGAAGTTACATCAAGGAATCTGACGACGAAGAAATGTTCATGGACAGTCTGGCCCGTGCCAGTATGATGTCTGGTAAAAGCGGAAACGTTAGTACATCTAAGAACGTTGCACGTTGCGGTATTTGTTTGCAGTGGTTCAACGATCACACGACGATGCTGACTCATCTGCAAACGCACTCGGACAGCTACGTTTACAAAAGCTTCAACTGCCGTGTCTGCAAAAAGACATTCAAAGAGAAATGGCAGCTGCTTCGTCACGAGATTTCTCACAAACGAGCGGCGAACGCGGTTCTCTATACTTGTTCAACTTGCAAAAAGACCTTCAAAGACAAGGCTCTGCACAAGGCACACGAGGCTACACATGTTGTAGACAAAACTTATCACTGTCCAAGATGCAACAAGATATTCTTCAAGGAGTTCTCGCTGCTCGCACACCAGTGCAGCTCCGGGAATAAGGCATTTGGAAAGCGAGGGGCTAACAGCAAGACTTCAGCCAAGGCAACTATGTCCTTCGGAGCTTTCAAGAAGTATAAATGCTCCAAATGCAATGCTACGTTCAACAATTCCCAGTCGAGAAATTCCCACATGAGGGTACACACGCAGGCGCATGCAATGCTGCAAGTGCGGAAAAAAGAACTGAAAAAGGAACTAGAAATGTCTAAAACCACGCCAAAATTATCAACGGAAGACGCTTCGCCAGGTACTTCAGTTACGACTCAAAAAGAACCTTTGGCTGAGGTAAAGATCGAAGATTCTCCTGCCGCGCCACCTGCCCTTAAACGTACCTTGATAAGGACTGCTGGGGGATATCGATGCGGAGTTTGTCAGTCACCGTTTGTCCTTAGAGAATTGGCGGTGGCACACTTGAGGTCAGCACATCCTGCGGCAACGATTAACTGTCCGCATTGCAAGAAGCAGTTTTCAACCCGTTATACGCTAACGCGTCATGTAGAGACGGTACACCCGGACGAATCGGAGAAATAG
- Protein Sequence
- MTTMKQDWDKACRLCSEEKAEMLPIFGVEGTQRKVTQKMRACFPVMVYKTDPLPKQICQFCAARLDDAYEFRERCLGVYKTMHIQLLASKESETVQIFLQAMKNSPDPCQAQLCKEKARAPPPLVPLPASLPSNKSLAPVIPSKKQDSNVARESLVELPCEVQIKEEPMDLVDGTRSIIQSGSITAEELFNSVRNERMEMNSRNGNGSTSILEQVLTGNLKINDRKEPKPKFKLSSKWWCAPCNRYYRTKESLRKHMRLFCPRRYRCKKCTSVFPTVQELAKHEGSHHLKVTLNFDECVNECDQCDREFVSWEVLRHHRQRDHQQKPAAGTDTNTWCSPCNRFFPTLELYQNHKQLHQPDLAAILPAANERAENLLNKNHYVENMKLLMCPTCGKVCTQQSALSNHMRTHEPKKHKCEICGRSFGLFIRLAAHKLSEHNQQPIMSPVMTSVEQEEALNAEREAREAREAGEVEETATGGGSNRSYIKESDDEEMFMDSLARASMMSGKSGNVSTSKNVARCGICLQWFNDHTTMLTHLQTHSDSYVYKSFNCRVCKKTFKEKWQLLRHEISHKRAANAVLYTCSTCKKTFKDKALHKAHEATHVVDKTYHCPRCNKIFFKEFSLLAHQCSSGNKAFGKRGANSKTSAKATMSFGAFKKYKCSKCNATFNNSQSRNSHMRVHTQAHAMLQVRKKELKKELEMSKTTPKLSTEDASPGTSVTTQKEPLAEVKIEDSPAAPPALKRTLIRTAGGYRCGVCQSPFVLRELAVAHLRSAHPAATINCPHCKKQFSTRYTLTRHVETVHPDESEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00060600;
- 90% Identity
- iTF_01411803;
- 80% Identity
- -