Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000035:1871245-1876472[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.9 3.9e+02 1.3 0.2 23 46 246 269 236 275 0.83

2 12 5.7 4.5e+02 1.0 0.2 21 44 272 295 268 298 0.84

3 12 0.00074 0.059 13.5 0.1 18 51 296 330 288 332 0.81

4 12 0.14 11 6.2 0.1 21 46 328 353 325 356 0.90

5 12 0.0046 0.36 11.0 0.0 21 48 356 383 352 387 0.87

6 12 0.13 10 6.3 0.1 21 45 384 408 382 416 0.86

7 12 1.1 86 3.3 0.0 19 46 466 494 459 500 0.79

8 12 1.1 91 3.3 0.1 21 45 497 521 493 524 0.79

9 12 0.012 0.94 9.6 0.1 21 51 525 555 521 557 0.87

10 12 2.4 1.9e+02 2.3 0.3 22 45 554 577 551 585 0.69

11 12 0.21 16 5.7 0.1 21 51 585 615 581 617 0.85

12 12 0.0078 0.62 10.2 0.3 21 44 613 636 609 640 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.9	3.9e+02	1.3	0.2	23	46	246	269	236	275	0.83
2	12	5.7	4.5e+02	1.0	0.2	21	44	272	295	268	298	0.84
3	12	0.00074	0.059	13.5	0.1	18	51	296	330	288	332	0.81
4	12	0.14	11	6.2	0.1	21	46	328	353	325	356	0.90
5	12	0.0046	0.36	11.0	0.0	21	48	356	383	352	387	0.87
6	12	0.13	10	6.3	0.1	21	45	384	408	382	416	0.86
7	12	1.1	86	3.3	0.0	19	46	466	494	459	500	0.79
8	12	1.1	91	3.3	0.1	21	45	497	521	493	524	0.79
9	12	0.012	0.94	9.6	0.1	21	51	525	555	521	557	0.87
10	12	2.4	1.9e+02	2.3	0.3	22	45	554	577	551	585	0.69
11	12	0.21	16	5.7	0.1	21	51	585	615	581	617	0.85
12	12	0.0078	0.62	10.2	0.3	21	44	613	636	609	640	0.91

Sequence Information

Coding Sequence: ATGGATGATAACAAGGAAGCATCAAATCCATTAATGAATAATGAAATCGAAAGTAATCCTAAAGAATTGTTATCTACGATTAAAACAGAAGAAATTGAAATTGAAGAATGTAAACTCGAATTCGAGAACTTGCATCAAATAATGAAAAGGGAAAGTTCTGTCGAAAAAGTTTCTTCAACTAAAAGCGATGTTGTATTAATAAGCAAAGAAAATATAAAAACTGAAAATGTTGATTCAAATGAGAATATTGAAGAAAGAAAATGTGATATCGAAATTAAAACAGAAGCTACATTTGATTTCCATGCAAATGCTATCCATGATTTTGTTGAAAATCGACAAACAGGGCAAACAATTAAAATGTATCCTAGGAAAAAAAGTTTCCTATCTGCGGCAAAAAAATGGTATCATCATTTTGGGAAATTCAATGGAACATGTTTGTATTGTGGACATTTTTTTTGTGGTAAATTGTTATTTTTACACCATTTTAGTATTTACCACTTTATAGTTAAATCTAAAAAATCTGTTGATTTGAGAATGAATAATTCTGCTACTAAACATATTGGACAAATATCCTTTAAATGTGAAATTTGTTCAAAAGGTTTTCAAAGTTTGAGTGATTTAGAAATGCATTATGTAATTCATAGTGATGAGAAACTTTGTAAATGTGAAATTTGTTCTAAATGTTTTAAAAACCAAAGTTATTTAAAAGAGCATAATAGACTTCACACTAACGAAAAATTATTCAAATGTAAAGTTTGTTCAAAGTGTTTTACAAATTCTAGTAATCTTAAAATCCATTTTAGAATTCACACTAACGAAAGACCTTTTAAATGTGGAATTTGTTCAAAATGTTTCAGAACATTTGGTCATTTAAAAATTCATGTTAGAAGTCACACTGGCGAGAGACCATTTAAATGTGGAATTTGTTCAAAATGTTTCACACAATCAAGTCATTTAAATCGACATGTTGAAACTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCGAAATGTTTTCACAATTCAACTAATTTAAACATTCATATGAGAATTCACACTGGCGAGAAACCTTCTAAATGTGAAATTTGTTCTAAATGCTTCACACAATCCGGTGATTTAAAAAAGCATATTAGAATTCACACTGGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATGTTTCATAAAATCTTATGATTTAAAAAGGCATACTAGAACTCACACTGACAATAAACCTTTTAAATGTGAATATTGTTCAAAGTGTTTCACAGAAAATAGAAGATTAAAACAGCATATTATTAGAGATCACACTGGTGAAAAGGCATTCAAATGTGAAATTTGTCTAAAATGTTACAAACTACAAAATGATTTAAAACTACATATTAGAACTCACAGTGAAGAGAAACCTTTTAAATGTAAATTTTGTTCAAAATGTTTCACAGGACAAAGTAATTTAATTCGACATGTTAAAACTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAAGACAAAGTGATTTAAAACAACATATTAGAATTCATACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTACACACAATCCGGTGATTTAAAAAAGCATATTAGAATTCACACCGGTGAAAAACCATACAGATGTGAAATTTGTTCAAAATGTTTCAGTAATCAAAGTACTTTGAAACGTAATTTAAACCAACATATTAGATTTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTCCAAAATGTTTCACAGAACAAAGTAATTTAAAACAACATATTAGAATTCACACTGGTGAGAAACCTTTTGAATGTAATATTTGTTCAAAATGTTTCACACAATCCCGTAGCTTAAAAACTCATATTAGAACTCACACTGACGAGAAAGCATTTTAA
Protein Sequence: MDDNKEASNPLMNNEIESNPKELLSTIKTEEIEIEECKLEFENLHQIMKRESSVEKVSSTKSDVVLISKENIKTENVDSNENIEERKCDIEIKTEATFDFHANAIHDFVENRQTGQTIKMYPRKKSFLSAAKKWYHHFGKFNGTCLYCGHFFCGKLLFLHHFSIYHFIVKSKKSVDLRMNNSATKHIGQISFKCEICSKGFQSLSDLEMHYVIHSDEKLCKCEICSKCFKNQSYLKEHNRLHTNEKLFKCKVCSKCFTNSSNLKIHFRIHTNERPFKCGICSKCFRTFGHLKIHVRSHTGERPFKCGICSKCFTQSSHLNRHVETHTGEKPFKCEICSKCFHNSTNLNIHMRIHTGEKPSKCEICSKCFTQSGDLKKHIRIHTGEKPYKCEICSKCFIKSYDLKRHTRTHTDNKPFKCEYCSKCFTENRRLKQHIIRDHTGEKAFKCEICLKCYKLQNDLKLHIRTHSEEKPFKCKFCSKCFTGQSNLIRHVKTHTGEKPFKCEICSKCFTRQSDLKQHIRIHTGEKPFKCEICLKCYTQSGDLKKHIRIHTGEKPYRCEICSKCFSNQSTLKRNLNQHIRFHTGEKPFKCEICPKCFTEQSNLKQHIRIHTGEKPFECNICSKCFTQSRSLKTHIRTHTDEKAF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056804;
90% Identity: iTF_00056817;
80% Identity: iTF_00056817;