Avir009311.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000035:1871245-1876472[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00018 0.0058 17.0 0.3 1 23 192 214 192 214 0.96
2 16 0.00018 0.0056 17.1 7.2 2 23 221 242 220 242 0.95
3 16 1.4e-06 4.3e-05 23.7 5.4 1 23 248 270 248 270 0.98
4 16 2.6e-05 0.00082 19.7 5.6 1 23 276 298 276 298 0.99
5 16 1.2e-06 3.9e-05 23.9 5.5 1 23 304 326 304 326 0.98
6 16 2.6e-06 8.2e-05 22.8 5.3 1 23 332 354 332 354 0.99
7 16 4.1e-07 1.3e-05 25.4 2.7 2 23 361 382 360 382 0.98
8 16 1.4e-06 4.5e-05 23.7 5.3 1 23 388 410 388 410 0.99
9 16 0.00023 0.0072 16.7 4.4 1 23 416 439 416 439 0.97
10 16 7.5e-05 0.0023 18.3 3.4 1 23 445 467 445 467 0.99
11 16 3.5e-06 0.00011 22.4 5.5 1 23 473 495 473 495 0.99
12 16 4.7e-08 1.5e-06 28.3 3.8 1 23 501 523 501 523 0.99
13 16 1.6e-06 4.9e-05 23.5 2.5 1 23 529 551 529 551 0.99
14 16 0.02 0.62 10.6 8.3 1 18 557 574 557 583 0.92
15 16 3.4e-08 1.1e-06 28.7 2.4 1 23 589 611 589 611 0.99
16 16 4.7e-07 1.5e-05 25.2 4.8 1 23 617 639 617 639 0.99

Sequence Information

Coding Sequence
ATGGATGATAACAAGGAAGCATCAAATCCATTAATGAATAATGAAATCGAAAGTAATCCTAAAGAATTGTTATCTACGATTAAAACAGAAGAAATTGAAATTGAAGAATGTAAACTCGAATTCGAGAACTTGCATCAAATAATGAAAAGGGAAAGTTCTGTCGAAAAAGTTTCTTCAACTAAAAGCGATGTTGTATTAATAAGCAAAGAAAATATAAAAACTGAAAATGTTGATTCAAATGAGAATATTGAAGAAAGAAAATGTGATATCGAAATTAAAACAGAAGCTACATTTGATTTCCATGCAAATGCTATCCATGATTTTGTTGAAAATCGACAAACAGGGCAAACAATTAAAATGTATCCTAGGAAAAAAAGTTTCCTATCTGCGGCAAAAAAATGGTATCATCATTTTGGGAAATTCAATGGAACATGTTTGTATTGTGGACATTTTTTTTGTGGTAAATTGTTATTTTTACACCATTTTAGTATTTACCACTTTATAGTTAAATCTAAAAAATCTGTTGATTTGAGAATGAATAATTCTGCTACTAAACATATTGGACAAATATCCTTTAAATGTGAAATTTGTTCAAAAGGTTTTCAAAGTTTGAGTGATTTAGAAATGCATTATGTAATTCATAGTGATGAGAAACTTTGTAAATGTGAAATTTGTTCTAAATGTTTTAAAAACCAAAGTTATTTAAAAGAGCATAATAGACTTCACACTAACGAAAAATTATTCAAATGTAAAGTTTGTTCAAAGTGTTTTACAAATTCTAGTAATCTTAAAATCCATTTTAGAATTCACACTAACGAAAGACCTTTTAAATGTGGAATTTGTTCAAAATGTTTCAGAACATTTGGTCATTTAAAAATTCATGTTAGAAGTCACACTGGCGAGAGACCATTTAAATGTGGAATTTGTTCAAAATGTTTCACACAATCAAGTCATTTAAATCGACATGTTGAAACTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCGAAATGTTTTCACAATTCAACTAATTTAAACATTCATATGAGAATTCACACTGGCGAGAAACCTTCTAAATGTGAAATTTGTTCTAAATGCTTCACACAATCCGGTGATTTAAAAAAGCATATTAGAATTCACACTGGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATGTTTCATAAAATCTTATGATTTAAAAAGGCATACTAGAACTCACACTGACAATAAACCTTTTAAATGTGAATATTGTTCAAAGTGTTTCACAGAAAATAGAAGATTAAAACAGCATATTATTAGAGATCACACTGGTGAAAAGGCATTCAAATGTGAAATTTGTCTAAAATGTTACAAACTACAAAATGATTTAAAACTACATATTAGAACTCACAGTGAAGAGAAACCTTTTAAATGTAAATTTTGTTCAAAATGTTTCACAGGACAAAGTAATTTAATTCGACATGTTAAAACTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAAGACAAAGTGATTTAAAACAACATATTAGAATTCATACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTACACACAATCCGGTGATTTAAAAAAGCATATTAGAATTCACACCGGTGAAAAACCATACAGATGTGAAATTTGTTCAAAATGTTTCAGTAATCAAAGTACTTTGAAACGTAATTTAAACCAACATATTAGATTTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTCCAAAATGTTTCACAGAACAAAGTAATTTAAAACAACATATTAGAATTCACACTGGTGAGAAACCTTTTGAATGTAATATTTGTTCAAAATGTTTCACACAATCCCGTAGCTTAAAAACTCATATTAGAACTCACACTGACGAGAAAGCATTTTAA
Protein Sequence
MDDNKEASNPLMNNEIESNPKELLSTIKTEEIEIEECKLEFENLHQIMKRESSVEKVSSTKSDVVLISKENIKTENVDSNENIEERKCDIEIKTEATFDFHANAIHDFVENRQTGQTIKMYPRKKSFLSAAKKWYHHFGKFNGTCLYCGHFFCGKLLFLHHFSIYHFIVKSKKSVDLRMNNSATKHIGQISFKCEICSKGFQSLSDLEMHYVIHSDEKLCKCEICSKCFKNQSYLKEHNRLHTNEKLFKCKVCSKCFTNSSNLKIHFRIHTNERPFKCGICSKCFRTFGHLKIHVRSHTGERPFKCGICSKCFTQSSHLNRHVETHTGEKPFKCEICSKCFHNSTNLNIHMRIHTGEKPSKCEICSKCFTQSGDLKKHIRIHTGEKPYKCEICSKCFIKSYDLKRHTRTHTDNKPFKCEYCSKCFTENRRLKQHIIRDHTGEKAFKCEICLKCYKLQNDLKLHIRTHSEEKPFKCKFCSKCFTGQSNLIRHVKTHTGEKPFKCEICSKCFTRQSDLKQHIRIHTGEKPFKCEICLKCYTQSGDLKKHIRIHTGEKPYRCEICSKCFSNQSTLKRNLNQHIRFHTGEKPFKCEICPKCFTEQSNLKQHIRIHTGEKPFECNICSKCFTQSRSLKTHIRTHTDEKAF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00056804;
90% Identity
iTF_00057486; iTF_00057446; iTF_00056804;
80% Identity
iTF_00057486;