Avir009333.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000035:1898384-1901800[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2.8 86 3.9 6.3 2 23 144 166 144 166 0.92
2 18 0.00019 0.006 17.0 0.3 1 23 192 214 192 214 0.96
3 18 0.00019 0.0059 17.0 7.2 2 23 221 242 220 242 0.95
4 18 1.4e-06 4.5e-05 23.6 5.4 1 23 248 270 248 270 0.98
5 18 3.5e-06 0.00011 22.4 5.1 1 23 276 298 276 298 0.99
6 18 1.3e-06 4.1e-05 23.8 5.5 1 23 304 326 304 326 0.98
7 18 2.7e-06 8.5e-05 22.8 5.3 1 23 332 354 332 354 0.99
8 18 4.3e-07 1.4e-05 25.3 2.7 2 23 361 382 360 382 0.98
9 18 1.5e-06 4.7e-05 23.6 5.3 1 23 388 410 388 410 0.99
10 18 0.00048 0.015 15.7 4.0 1 23 416 439 416 439 0.97
11 18 7.8e-05 0.0024 18.2 3.4 1 23 445 467 445 467 0.99
12 18 3.7e-06 0.00011 22.4 5.5 1 23 473 495 473 495 0.99
13 18 4.9e-08 1.5e-06 28.3 3.8 1 23 501 523 501 523 0.99
14 18 1.6e-06 5.1e-05 23.5 2.5 1 23 529 551 529 551 0.99
15 18 4.8e-08 1.5e-06 28.3 4.1 1 23 557 579 557 579 0.99
16 18 1.9e-07 6.1e-06 26.4 4.7 1 23 585 607 585 607 0.98
17 18 1.1e-06 3.6e-05 24.0 4.6 1 23 613 635 613 635 0.98
18 18 5.5e-07 1.7e-05 25.0 5.9 1 23 641 663 641 663 0.99

Sequence Information

Coding Sequence
ATGGATGATAACAAAGAAGCATCAAATCCATTAATGAATAATGAAATCAAAAGTAATCCTAAAGAATTGTTATCTACGATTAAAACTGAAGAAATTGAAATTGAAGAATGTAAACTCGAATTCGAGAACTTGCATCAAATAATGAAAAGGGAAAGTTCTGTCGAAAAAGTTTCTTCAACTAAAAGCGATGTTGTATTAATAAGCAAAGAAAATATAAAAACTGAAAATGTTGATTCAAATGAGAATATTGAAGAAAGAAAATGTGATATCGAAATTAAAACAGAAGCTACATTTGATTTCCATGCAAATGCTATCCATGATTTTGTTGAAAATCGACAAACAGGGCAAACAATTAAAATGTATCCTAGGAAAAAAAGTTTCCTATCTGCGGCAAAAAAATGGTATCATCATTTTGGGAAATTCAATGGAACATGTTTGTATTGTGGACATTTCTTTTGTGATAAATTGTTATTTTTACACCATTTTAGTATTTACCACTTTATAGTTAAATCTAAAAAATCTGTTGATTTGAGAATGAATAATTCTGCTACTAAACATATTGGACAAATATCCTTTAAATGTGAAATTTGTTCAAAAGGTTTTCAAAGTTTGAGTGATTTAGAAATGCATTATGTAATTCATAGTGATGAGAAACTTTGTAAATGTGAAATTTGTTCTAAATGTTTTAAAAACCAAAGTTATTTAAAAGAGCATAATAGACTTCACACTAACGAAAAATTATTCAAATGTAAAGTTTGTTCAAAGTGTTTTACAAATTCTAGTAATCTTAAAATCCATTTTAGAATTCACACTAACGAAAGACCTTTTAAATGTGGAATTTGTTCAAAATGTTTCAGAACATCTGGTCATTTAAAAATTCATGTTAGAAGTCACACTGGCGAGAGACCATTTAAATGTGGAATTTGTTCAAAATGTTTCACACAATCAAGTCATTTAAATCGACATGTTGAAACTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCGAAATGTTTTCACAATTCAACTAATTTAAACATTCATATGAGAATTCACACTGGCGAGAAACCTTCTAAATGTGAAATTTGTTCTAAATGTTTCACACAATCCGGTGATTTAAAAAAGCATATTAGAATTCACACTGGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATGTTTCATAAAATCTTATGATTTAAAAAGGCATACTAGAACTCACACTGACAATAAACCTTTTAAATGTGAATATTGTTCAAAGTGTTTCACAGCAAATAGAAGATTAAAACAGCATATTATTAGAGATCACACTGGTGAAAAGGCATTCAAATGTGAAATTTGTCTAAAATGTTACAAACTACAAAATGATTTAAAACTACATATTAGAACTCACAGTGAAGAGAAACCTTTTAAATGTAAATTTTGTTCAAAATGTTTCACAGGACAAAGTAATTTAATTCGACATGTTAAAACTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAAGACAAAGTGATTTAAAACAACATATTAGAATTCATACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTACACACAATCCGGTGATTTAAAAAAGCATATTAGAATTCACACCGGTGAAAAACCATACAGATGTGAAATTTGTTCAAAATGTTTCACTAATCAAAGTACTTTGAAACGGCATATTAGAATTCACATTGACAAGAAATCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAGACCAAAGTAATTTAAAACAACATATTAGATTTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAGAACAAAGTAATTTAAAACAACATATTAGATTTCACACTGGTGAGAAACCTTTTAAATGTAATATTTGTTCAAAATGTTTCACACAATCCCGTAGCTTAAAAACTCATATTAGAACTCACACTGACGAGAAAGAATTTTAA
Protein Sequence
MDDNKEASNPLMNNEIKSNPKELLSTIKTEEIEIEECKLEFENLHQIMKRESSVEKVSSTKSDVVLISKENIKTENVDSNENIEERKCDIEIKTEATFDFHANAIHDFVENRQTGQTIKMYPRKKSFLSAAKKWYHHFGKFNGTCLYCGHFFCDKLLFLHHFSIYHFIVKSKKSVDLRMNNSATKHIGQISFKCEICSKGFQSLSDLEMHYVIHSDEKLCKCEICSKCFKNQSYLKEHNRLHTNEKLFKCKVCSKCFTNSSNLKIHFRIHTNERPFKCGICSKCFRTSGHLKIHVRSHTGERPFKCGICSKCFTQSSHLNRHVETHTGEKPFKCEICSKCFHNSTNLNIHMRIHTGEKPSKCEICSKCFTQSGDLKKHIRIHTGEKPYKCEICSKCFIKSYDLKRHTRTHTDNKPFKCEYCSKCFTANRRLKQHIIRDHTGEKAFKCEICLKCYKLQNDLKLHIRTHSEEKPFKCKFCSKCFTGQSNLIRHVKTHTGEKPFKCEICSKCFTRQSDLKQHIRIHTGEKPFKCEICLKCYTQSGDLKKHIRIHTGEKPYRCEICSKCFTNQSTLKRHIRIHIDKKSFKCEICSKCFTDQSNLKQHIRFHTGEKPFKCEICSKCFTEQSNLKQHIRFHTGEKPFKCNICSKCFTQSRSLKTHIRTHTDEKEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00057446; iTF_00057486; iTF_00056817;
90% Identity
iTF_00056817;
80% Identity
iTF_00057446;