Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000881:120773-126587[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.13 10 6.3 0.1 23 45 197 219 193 227 0.85

2 10 5.8 4.6e+02 1.0 0.1 21 45 308 332 301 335 0.85

3 10 0.041 3.2 7.9 0.0 21 48 336 363 332 367 0.87

4 10 0.027 2.1 8.5 0.0 21 48 364 391 362 395 0.87

5 10 0.038 3 8.0 0.2 21 49 392 420 388 425 0.85

6 10 0.0037 0.3 11.2 0.1 21 46 505 530 500 537 0.87

7 10 1.6 1.3e+02 2.8 0.1 21 45 590 614 581 622 0.82

8 10 0.031 2.5 8.3 0.1 21 46 646 671 637 677 0.89

9 10 0.13 10 6.3 0.1 22 46 675 699 672 704 0.87

10 10 9.1 7.2e+02 0.4 0.2 22 44 703 725 700 729 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.13	10	6.3	0.1	23	45	197	219	193	227	0.85
2	10	5.8	4.6e+02	1.0	0.1	21	45	308	332	301	335	0.85
3	10	0.041	3.2	7.9	0.0	21	48	336	363	332	367	0.87
4	10	0.027	2.1	8.5	0.0	21	48	364	391	362	395	0.87
5	10	0.038	3	8.0	0.2	21	49	392	420	388	425	0.85
6	10	0.0037	0.3	11.2	0.1	21	46	505	530	500	537	0.87
7	10	1.6	1.3e+02	2.8	0.1	21	45	590	614	581	622	0.82
8	10	0.031	2.5	8.3	0.1	21	46	646	671	637	677	0.89
9	10	0.13	10	6.3	0.1	22	46	675	699	672	704	0.87
10	10	9.1	7.2e+02	0.4	0.2	22	44	703	725	700	729	0.85

Sequence Information

Coding Sequence: ATGGATGGTATCAAAGAAGCATCAAATCCATTAATGAATATTAAAATGGAAAGTAATTCTAAAGAATTGTTATCTACGATTAAAACTGAAGAAATTGAAATTGAAGAATGTAAACTCAAACTTGAGAACTTTTATGTGATCAAAAGGGAAAGTTCTGTAGAAAAAGTTTCTTCAACTAAAAGCAATGTTGTGTTAATAAGCAAAGAAAATATAAAAACTGAAAATGTTGATTTAAATGCGGATGTTGAAGAAAAAAAATGTGATATCGAAATTAAAACAGAAGCAACATTTGATTTCCATGCAAATGTTATCCATGATTTTGTTGGAAATCGACAAACAGGGCAAACAATCAAGAAAACAAGTTTCCTATCTGCGGAAAAAAAATGGCATCATCATTTTGGGAAATTCAATGGAACATGTTTGTATTGTGGACATTTTTTTTGTGATAAATTGTTATTTTTACACCATTTTAGTATTTACCACTTTATAGTTAAATCTAAAAAATCTGTTGATTTGAGAATGAATAATTCAAAATGTTTCACAAATTCTAGTAGTTTCAAAATCCATTTTAAACTTCACACTAACAAGAGACCTTATAAATGTGAAATTTGTGCAAAATCTTTTATAAAATCTAATGATTTAAGAAGGCATACTAGAACTCACACTGGCGATAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCATAGAAACTGGATTCTTAAAACAGCATATTATTAGATATCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTTTAAAATGTTTCACACTACAAAATGATGTAAAACTACATATTAGAAATCACATTGCAGATAAATATTTTAAATGTACAGTTTGTTCAAAATGTTTCACAGGACAAAGTCATTTAAATCGACATGTTAAAACTCATACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAACAACTAGCCATTTAAAAACGCATATTAGAATTCACACTGGCGAGAAACCTTTTATATGTAAAATTTGTTCAAAATGTTTCGTACAATCTGGTGATTTAAATAAGCATATTAAAATTCACACTGATGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATATTTCACACAATCCGGTGATTTAAAAAAGCATATTAGAATTCACACTGGTGAAAAACCGTTCAGATGTGAAATTTGTTCAAAATATTTCACACAATCCAGTAGCTTAAAAAAACATATTAGAACTCATACTGCCGAAAAACCTTTTAGATGTGAATATTGTTCAAAGTCTTTCACAGAAAAAGGAATCTTAAAAAATCATCTTATTAGAGATCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTCTAAAATGTTTCACACTACAAAATGATTTAAAACTACATATTAGAACTCACACTACAGATAAACCTTTTAAATGTAAAATTTGTCCGAAAGGTTTTCAAAGAGCCGGTCATTTAAATATGCATATTAAAATTCACACTGGTGAGAAACCTTATAAATGTGAAATATGTTCGAAATGTTTCACACAATCCAGTGACTTAAAAAGGCATATTAGAACTCACACTGGCGAAAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACAGAAAATGGAAGCTTAAAACAGCATATTATTAAATATCACACTGGTGAAAAATCATTCAAATGTGAAATTTGTCTAAAATGTTACACACTACAAAATGATTTAAAACTACATATTAGAACTCACAGTGCAGATAAACCTTTTAAGTGTGAAATTTGTTTAAAATGTTTCAAAAACCAAAATTATTTAAAACAGCATATTAGAAGTCATACCGGCAAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTACAGAATTCAGTATATTAAAAAGTCATATGAGAATTCACAATAACGAGAAACCTTTTAAATGTAAATTTTGTTCAAAATGTTTCACACAATCAAGTAATTTAAATAAGCATGTTAGAATTCATACTGGCGAGAAAGCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATCTAGTAATCTAAAAATTCATGTTAAAATTCACACTGGCGAGAAAGCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATAACATCATGTAATTTAAAAACGCATACTAGAACTCATACTGGTAAAATCTTACAGTTGTGA
Protein Sequence: MDGIKEASNPLMNIKMESNSKELLSTIKTEEIEIEECKLKLENFYVIKRESSVEKVSSTKSNVVLISKENIKTENVDLNADVEEKKCDIEIKTEATFDFHANVIHDFVGNRQTGQTIKKTSFLSAEKKWHHHFGKFNGTCLYCGHFFCDKLLFLHHFSIYHFIVKSKKSVDLRMNNSKCFTNSSSFKIHFKLHTNKRPYKCEICAKSFIKSNDLRRHTRTHTGDKPFRCEYCSKCFIETGFLKQHIIRYHTGEKSFKCEICLKCFTLQNDVKLHIRNHIADKYFKCTVCSKCFTGQSHLNRHVKTHTGEKPFKCEICSKCFTTTSHLKTHIRIHTGEKPFICKICSKCFVQSGDLNKHIKIHTDEKPFKCEICSKYFTQSGDLKKHIRIHTGEKPFRCEICSKYFTQSSSLKKHIRTHTAEKPFRCEYCSKSFTEKGILKNHLIRDHTGEKSFKCEICLKCFTLQNDLKLHIRTHTTDKPFKCKICPKGFQRAGHLNMHIKIHTGEKPYKCEICSKCFTQSSDLKRHIRTHTGEKPFRCEYCSKCFTENGSLKQHIIKYHTGEKSFKCEICLKCYTLQNDLKLHIRTHSADKPFKCEICLKCFKNQNYLKQHIRSHTGKKPFKCKICSKCFTEFSILKSHMRIHNNEKPFKCKFCSKCFTQSSNLNKHVRIHTGEKAFKCEICSKCFTQSSNLKIHVKIHTGEKAFKCEICSKCFITSCNLKTHTRTHTGKILQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056829;
90% Identity: iTF_00056801;
80% Identity: iTF_00056801;