Avir004469.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001737:86444-93155[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.45 14 6.3 3.6 3 23 144 165 143 165 0.92 2 19 1.2 37 5.1 0.4 8 21 182 195 181 196 0.90 3 19 1.5e-05 0.00046 20.5 1.6 1 23 203 225 203 225 0.98 4 19 0.0015 0.046 14.2 2.1 1 23 231 254 231 254 0.97 5 19 1.5e-05 0.00046 20.5 3.2 1 23 260 282 260 282 0.99 6 19 2.5e-05 0.00078 19.7 8.6 1 23 288 310 288 310 0.99 7 19 2.5e-07 7.8e-06 26.1 1.2 1 23 316 338 316 338 0.99 8 19 2.4e-07 7.5e-06 26.1 2.9 1 23 344 367 344 367 0.98 9 19 0.00048 0.015 15.7 1.0 1 23 373 396 373 396 0.96 10 19 1.5e-05 0.00046 20.5 3.2 1 23 402 424 402 424 0.99 11 19 2.4e-06 7.6e-05 22.9 1.0 1 23 430 452 430 452 0.99 12 19 1.6e-08 4.9e-07 29.8 4.4 1 23 458 480 458 480 0.99 13 19 2.9e-05 0.0009 19.6 3.7 1 23 486 509 486 509 0.97 14 19 1.5e-05 0.00046 20.5 3.2 1 23 515 537 515 537 0.99 15 19 6.4e-06 0.0002 21.6 5.1 1 23 543 565 543 565 0.99 16 19 0.001 0.032 14.7 4.0 1 23 571 593 571 593 0.99 17 19 3.4e-06 0.00011 22.5 5.6 1 23 599 621 599 621 0.98 18 19 0.00036 0.011 16.1 2.4 1 18 627 644 627 644 0.96 19 19 0.046 1.4 9.5 0.3 8 22 661 675 654 675 0.89
Sequence Information
- Coding Sequence
- ATGGATCGTATGAAAGAAGCATCAAATCCATTAATGAATATCGAAATCGAAAGTAATCCTAAAGAATTGTTATCTACGATTAAAACCGAAGAAATTGAAATTGAAGAATGTAAACTCAAACTTGAGAACTTTTATGTGATCAAAAGGGAAAGTTCTGTAGAAAAAGTTTCTTCAACTAAAAGCAATGTTGTGTTAATAAGCAAAGACAATATAAAAACTGAAAATGTTGATTTAAATGCGGATATTGACGAAAGAAAATGTGATATCGAAATTAAAACAGAAGATGCATTTGATTTCCATGCAAATGTTATCCATGATTTTGTTGAAAATCGACAAACAAGGCAAACAATTAAAATGTATTCTAAGAAAAAAAGTTTCCTATCTGCGGCGAAAAAATGGTCTCATCATTTTGGGAAATTCAATGGAATATGTTTGTATTGTGGACAATTTTTTTGTGATAAATTGTTATTTTTACATCATTTTAGTATTTATCACTTTGTAGGTAAATCTAAAAAATCTGTTGATTTGAGAATGAATAATTCAAAATGTTTCACAAATTCTAGTAGTTTCAAAATCCATTTTAAACTTCTCACTAGCAAGAGACCTTTTAAATGTGAAATTTGTGCAAAATCTTTTATAAAATCTAATGATTTAAAAAGGCATACTACAACTCACACTGGCAAAAAAACTTTTAAATGTGGATATTGTTCAAAGTGTTTCACAGAAAATGGAATCTTAAAACAGCATATTATTAGAGATCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTCTAAAATGTTTCACACTACAAAATGATCTAAAACTACATATTAGAACTCACAGTGACGAGAAACTTTTTAAATGTAAATTTTGTTCAAAATGTTTCACAGGACAAAGTCATTTAAATCGACATGTTAAAACTCATACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATATTTCACACAATCCGGTGATTTAAAAAAGCATATTAGAATTCACACTGGTGAAAAACCGTTCAGATGTGAAATTTGTTCAAAATATTTCACACAATCCAGTAGCTTAAAAAAACATATTAGAACAACTCACACTGGCGAAAAACCTTTTAGATGTGAATATTGTTCAAAGTCTTTCACAGAAAAAGGAATCTTAAAAAATCATCTTATTAGAGATCACATTGGTGAAAAGTCATTCAAATGTGAAATTTGTCTAAAATGTTTCACACTACAAAATGATTTAAAACTACATATTAGAACTCACACTGCCGATAAACCTTTTAAATGTAAAATTTGTCCAAAAGGTTTTCAAAGAGCTGGTCATTTAAATATGCATATTAAAATTCACACTGGTGAGAAACCTTATAAATGTGAAATATGTTCGAAATGTTTCACACAATCCAGTGATTTAAAAAGGCATATTAGAACTCACACTGGCGAAAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACAGAAAATGGAAGCTTAAAACAGCATATTATTAAATATCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTCTAAAATGTTTCACACTACAAAATGATTTAAAACTACATATTAGAACTCACACTGCAGATAAACCTTTTAAGTGTGAAATTTGTTTAAAATGTTTCAAAAACCAAAATTATTTAAAACAGCATATTAGAAGTCATACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTTACAGTATTTAGTATATTAAAAAGTCATATGAGAATTCACAATAACGAGAAACCTTTTAAATGTAAATTTTGTTCAAAATGTTTCACACAATCTAGTAATTTAAAAATTCATGTTAAAATTCACACTGGCGAGAAAGCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATAACATCAAGTAATTTAAAACGCATACTAGAACTCATACTGGTAAAACCTTACAGTTGTGAGATTAGTTCAAAATGTTTCTCACGAAAAAATGATTATAAAAATCATATGAGAATTTACACTGATGAGAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCGCATTACAAAGCAACTTAA
- Protein Sequence
- MDRMKEASNPLMNIEIESNPKELLSTIKTEEIEIEECKLKLENFYVIKRESSVEKVSSTKSNVVLISKDNIKTENVDLNADIDERKCDIEIKTEDAFDFHANVIHDFVENRQTRQTIKMYSKKKSFLSAAKKWSHHFGKFNGICLYCGQFFCDKLLFLHHFSIYHFVGKSKKSVDLRMNNSKCFTNSSSFKIHFKLLTSKRPFKCEICAKSFIKSNDLKRHTTTHTGKKTFKCGYCSKCFTENGILKQHIIRDHTGEKSFKCEICLKCFTLQNDLKLHIRTHSDEKLFKCKFCSKCFTGQSHLNRHVKTHTGEKPFKCEICSKYFTQSGDLKKHIRIHTGEKPFRCEICSKYFTQSSSLKKHIRTTHTGEKPFRCEYCSKSFTEKGILKNHLIRDHIGEKSFKCEICLKCFTLQNDLKLHIRTHTADKPFKCKICPKGFQRAGHLNMHIKIHTGEKPYKCEICSKCFTQSSDLKRHIRTHTGEKPFRCEYCSKCFTENGSLKQHIIKYHTGEKSFKCEICLKCFTLQNDLKLHIRTHTADKPFKCEICLKCFKNQNYLKQHIRSHTGEKPFKCKICLKCFTVFSILKSHMRIHNNEKPFKCKFCSKCFTQSSNLKIHVKIHTGEKAFKCEICSKCFITSSNLKRILELILVKPYSCEISSKCFSRKNDYKNHMRIYTDENLLNVKFVQNVSHYKAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057468; iTF_00057473; iTF_00056801;
- 90% Identity
- iTF_00057468;
- 80% Identity
- iTF_00057468;