Avir016534.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000881:120773-126587[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 3.1 96 3.7 6.3 2 23 139 161 139 161 0.92
2 21 0.31 9.7 6.9 1.1 8 23 178 193 177 193 0.94
3 21 1.4e-06 4.5e-05 23.6 1.6 1 23 199 221 199 221 0.99
4 21 0.0016 0.049 14.1 3.4 1 23 227 250 227 250 0.97
5 21 0.00065 0.02 15.3 2.7 1 23 256 278 256 278 0.98
6 21 5.4e-06 0.00017 21.8 6.8 1 23 284 306 284 306 0.99
7 21 1.3e-06 4.2e-05 23.8 6.5 1 23 312 334 312 334 0.99
8 21 9.9e-07 3.1e-05 24.2 1.8 1 23 340 362 340 362 0.98
9 21 2.6e-07 8.3e-06 26.0 1.2 1 23 368 390 368 390 0.99
10 21 1.4e-07 4.4e-06 26.8 2.9 1 23 396 418 396 418 0.99
11 21 0.00051 0.016 15.6 1.0 1 23 424 447 424 447 0.96
12 21 1.6e-05 0.00049 20.4 3.2 1 23 453 475 453 475 0.99
13 21 2.6e-06 8.1e-05 22.9 1.0 1 23 481 503 481 503 0.99
14 21 1.7e-08 5.2e-07 29.7 4.4 1 23 509 531 509 531 0.99
15 21 3.1e-05 0.00096 19.5 3.7 1 23 537 560 537 560 0.97
16 21 6.4e-05 0.002 18.5 3.0 1 23 566 588 566 588 0.99
17 21 6.8e-06 0.00021 21.5 5.1 1 23 594 616 594 616 0.99
18 21 0.00032 0.0099 16.3 4.6 1 23 622 644 622 644 0.99
19 21 1e-06 3.2e-05 24.1 6.2 1 23 650 672 650 672 0.99
20 21 3.2e-07 9.9e-06 25.7 3.2 1 23 678 700 678 700 0.98
21 21 2e-05 0.00063 20.0 7.7 1 23 706 728 706 728 0.99

Sequence Information

Coding Sequence
ATGGATGGTATCAAAGAAGCATCAAATCCATTAATGAATATTAAAATGGAAAGTAATTCTAAAGAATTGTTATCTACGATTAAAACTGAAGAAATTGAAATTGAAGAATGTAAACTCAAACTTGAGAACTTTTATGTGATCAAAAGGGAAAGTTCTGTAGAAAAAGTTTCTTCAACTAAAAGCAATGTTGTGTTAATAAGCAAAGAAAATATAAAAACTGAAAATGTTGATTTAAATGCGGATGTTGAAGAAAAAAAATGTGATATCGAAATTAAAACAGAAGCAACATTTGATTTCCATGCAAATGTTATCCATGATTTTGTTGGAAATCGACAAACAGGGCAAACAATCAAGAAAACAAGTTTCCTATCTGCGGAAAAAAAATGGCATCATCATTTTGGGAAATTCAATGGAACATGTTTGTATTGTGGACATTTTTTTTGTGATAAATTGTTATTTTTACACCATTTTAGTATTTACCACTTTATAGTTAAATCTAAAAAATCTGTTGATTTGAGAATGAATAATTCAAAATGTTTCACAAATTCTAGTAGTTTCAAAATCCATTTTAAACTTCACACTAACAAGAGACCTTATAAATGTGAAATTTGTGCAAAATCTTTTATAAAATCTAATGATTTAAGAAGGCATACTAGAACTCACACTGGCGATAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCATAGAAACTGGATTCTTAAAACAGCATATTATTAGATATCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTTTAAAATGTTTCACACTACAAAATGATGTAAAACTACATATTAGAAATCACATTGCAGATAAATATTTTAAATGTACAGTTTGTTCAAAATGTTTCACAGGACAAAGTCATTTAAATCGACATGTTAAAACTCATACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAACAACTAGCCATTTAAAAACGCATATTAGAATTCACACTGGCGAGAAACCTTTTATATGTAAAATTTGTTCAAAATGTTTCGTACAATCTGGTGATTTAAATAAGCATATTAAAATTCACACTGATGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATATTTCACACAATCCGGTGATTTAAAAAAGCATATTAGAATTCACACTGGTGAAAAACCGTTCAGATGTGAAATTTGTTCAAAATATTTCACACAATCCAGTAGCTTAAAAAAACATATTAGAACTCATACTGCCGAAAAACCTTTTAGATGTGAATATTGTTCAAAGTCTTTCACAGAAAAAGGAATCTTAAAAAATCATCTTATTAGAGATCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTCTAAAATGTTTCACACTACAAAATGATTTAAAACTACATATTAGAACTCACACTACAGATAAACCTTTTAAATGTAAAATTTGTCCGAAAGGTTTTCAAAGAGCCGGTCATTTAAATATGCATATTAAAATTCACACTGGTGAGAAACCTTATAAATGTGAAATATGTTCGAAATGTTTCACACAATCCAGTGACTTAAAAAGGCATATTAGAACTCACACTGGCGAAAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACAGAAAATGGAAGCTTAAAACAGCATATTATTAAATATCACACTGGTGAAAAATCATTCAAATGTGAAATTTGTCTAAAATGTTACACACTACAAAATGATTTAAAACTACATATTAGAACTCACAGTGCAGATAAACCTTTTAAGTGTGAAATTTGTTTAAAATGTTTCAAAAACCAAAATTATTTAAAACAGCATATTAGAAGTCATACCGGCAAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTACAGAATTCAGTATATTAAAAAGTCATATGAGAATTCACAATAACGAGAAACCTTTTAAATGTAAATTTTGTTCAAAATGTTTCACACAATCAAGTAATTTAAATAAGCATGTTAGAATTCATACTGGCGAGAAAGCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATCTAGTAATCTAAAAATTCATGTTAAAATTCACACTGGCGAGAAAGCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATAACATCATGTAATTTAAAAACGCATACTAGAACTCATACTGGTAAAATCTTACAGTTGTGA
Protein Sequence
MDGIKEASNPLMNIKMESNSKELLSTIKTEEIEIEECKLKLENFYVIKRESSVEKVSSTKSNVVLISKENIKTENVDLNADVEEKKCDIEIKTEATFDFHANVIHDFVGNRQTGQTIKKTSFLSAEKKWHHHFGKFNGTCLYCGHFFCDKLLFLHHFSIYHFIVKSKKSVDLRMNNSKCFTNSSSFKIHFKLHTNKRPYKCEICAKSFIKSNDLRRHTRTHTGDKPFRCEYCSKCFIETGFLKQHIIRYHTGEKSFKCEICLKCFTLQNDVKLHIRNHIADKYFKCTVCSKCFTGQSHLNRHVKTHTGEKPFKCEICSKCFTTTSHLKTHIRIHTGEKPFICKICSKCFVQSGDLNKHIKIHTDEKPFKCEICSKYFTQSGDLKKHIRIHTGEKPFRCEICSKYFTQSSSLKKHIRTHTAEKPFRCEYCSKSFTEKGILKNHLIRDHTGEKSFKCEICLKCFTLQNDLKLHIRTHTTDKPFKCKICPKGFQRAGHLNMHIKIHTGEKPYKCEICSKCFTQSSDLKRHIRTHTGEKPFRCEYCSKCFTENGSLKQHIIKYHTGEKSFKCEICLKCYTLQNDLKLHIRTHSADKPFKCEICLKCFKNQNYLKQHIRSHTGKKPFKCKICSKCFTEFSILKSHMRIHNNEKPFKCKFCSKCFTQSSNLNKHVRIHTGEKAFKCEICSKCFTQSSNLKIHVKIHTGEKAFKCEICSKCFITSCNLKTHTRTHTGKILQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00056829;
90% Identity
iTF_00057473;
80% Identity
iTF_00057473;