Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000035:1898384-1901800[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.7 5.3e+02 0.8 0.1 23 45 246 268 236 271 0.84

2 13 0.4 32 4.7 0.2 21 44 272 295 268 299 0.90

3 13 0.00093 0.073 13.2 0.1 18 48 296 327 289 331 0.81

4 13 0.17 14 5.9 0.1 21 45 328 352 326 355 0.90

5 13 0.0048 0.38 10.9 0.0 21 48 356 383 352 387 0.87

6 13 0.13 10 6.3 0.1 21 45 384 408 381 416 0.86

7 13 1.1 90 3.3 0.0 19 46 466 494 459 500 0.79

8 13 0.62 49 4.1 0.1 21 48 497 524 493 528 0.78

9 13 0.012 0.98 9.6 0.1 21 51 525 555 521 557 0.87

10 13 0.54 43 4.3 0.5 21 46 553 578 550 585 0.86

11 13 8.7 6.8e+02 0.5 0.1 26 45 586 605 581 608 0.86

12 13 0.19 15 5.8 0.1 21 47 609 635 605 640 0.86

13 13 0.0066 0.52 10.5 0.2 21 44 637 660 633 664 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.7	5.3e+02	0.8	0.1	23	45	246	268	236	271	0.84
2	13	0.4	32	4.7	0.2	21	44	272	295	268	299	0.90
3	13	0.00093	0.073	13.2	0.1	18	48	296	327	289	331	0.81
4	13	0.17	14	5.9	0.1	21	45	328	352	326	355	0.90
5	13	0.0048	0.38	10.9	0.0	21	48	356	383	352	387	0.87
6	13	0.13	10	6.3	0.1	21	45	384	408	381	416	0.86
7	13	1.1	90	3.3	0.0	19	46	466	494	459	500	0.79
8	13	0.62	49	4.1	0.1	21	48	497	524	493	528	0.78
9	13	0.012	0.98	9.6	0.1	21	51	525	555	521	557	0.87
10	13	0.54	43	4.3	0.5	21	46	553	578	550	585	0.86
11	13	8.7	6.8e+02	0.5	0.1	26	45	586	605	581	608	0.86
12	13	0.19	15	5.8	0.1	21	47	609	635	605	640	0.86
13	13	0.0066	0.52	10.5	0.2	21	44	637	660	633	664	0.91

Sequence Information

Coding Sequence: ATGGATGATAACAAAGAAGCATCAAATCCATTAATGAATAATGAAATCAAAAGTAATCCTAAAGAATTGTTATCTACGATTAAAACTGAAGAAATTGAAATTGAAGAATGTAAACTCGAATTCGAGAACTTGCATCAAATAATGAAAAGGGAAAGTTCTGTCGAAAAAGTTTCTTCAACTAAAAGCGATGTTGTATTAATAAGCAAAGAAAATATAAAAACTGAAAATGTTGATTCAAATGAGAATATTGAAGAAAGAAAATGTGATATCGAAATTAAAACAGAAGCTACATTTGATTTCCATGCAAATGCTATCCATGATTTTGTTGAAAATCGACAAACAGGGCAAACAATTAAAATGTATCCTAGGAAAAAAAGTTTCCTATCTGCGGCAAAAAAATGGTATCATCATTTTGGGAAATTCAATGGAACATGTTTGTATTGTGGACATTTCTTTTGTGATAAATTGTTATTTTTACACCATTTTAGTATTTACCACTTTATAGTTAAATCTAAAAAATCTGTTGATTTGAGAATGAATAATTCTGCTACTAAACATATTGGACAAATATCCTTTAAATGTGAAATTTGTTCAAAAGGTTTTCAAAGTTTGAGTGATTTAGAAATGCATTATGTAATTCATAGTGATGAGAAACTTTGTAAATGTGAAATTTGTTCTAAATGTTTTAAAAACCAAAGTTATTTAAAAGAGCATAATAGACTTCACACTAACGAAAAATTATTCAAATGTAAAGTTTGTTCAAAGTGTTTTACAAATTCTAGTAATCTTAAAATCCATTTTAGAATTCACACTAACGAAAGACCTTTTAAATGTGGAATTTGTTCAAAATGTTTCAGAACATCTGGTCATTTAAAAATTCATGTTAGAAGTCACACTGGCGAGAGACCATTTAAATGTGGAATTTGTTCAAAATGTTTCACACAATCAAGTCATTTAAATCGACATGTTGAAACTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCGAAATGTTTTCACAATTCAACTAATTTAAACATTCATATGAGAATTCACACTGGCGAGAAACCTTCTAAATGTGAAATTTGTTCTAAATGTTTCACACAATCCGGTGATTTAAAAAAGCATATTAGAATTCACACTGGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATGTTTCATAAAATCTTATGATTTAAAAAGGCATACTAGAACTCACACTGACAATAAACCTTTTAAATGTGAATATTGTTCAAAGTGTTTCACAGCAAATAGAAGATTAAAACAGCATATTATTAGAGATCACACTGGTGAAAAGGCATTCAAATGTGAAATTTGTCTAAAATGTTACAAACTACAAAATGATTTAAAACTACATATTAGAACTCACAGTGAAGAGAAACCTTTTAAATGTAAATTTTGTTCAAAATGTTTCACAGGACAAAGTAATTTAATTCGACATGTTAAAACTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAAGACAAAGTGATTTAAAACAACATATTAGAATTCATACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTACACACAATCCGGTGATTTAAAAAAGCATATTAGAATTCACACCGGTGAAAAACCATACAGATGTGAAATTTGTTCAAAATGTTTCACTAATCAAAGTACTTTGAAACGGCATATTAGAATTCACATTGACAAGAAATCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAGACCAAAGTAATTTAAAACAACATATTAGATTTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAGAACAAAGTAATTTAAAACAACATATTAGATTTCACACTGGTGAGAAACCTTTTAAATGTAATATTTGTTCAAAATGTTTCACACAATCCCGTAGCTTAAAAACTCATATTAGAACTCACACTGACGAGAAAGAATTTTAA
Protein Sequence: MDDNKEASNPLMNNEIKSNPKELLSTIKTEEIEIEECKLEFENLHQIMKRESSVEKVSSTKSDVVLISKENIKTENVDSNENIEERKCDIEIKTEATFDFHANAIHDFVENRQTGQTIKMYPRKKSFLSAAKKWYHHFGKFNGTCLYCGHFFCDKLLFLHHFSIYHFIVKSKKSVDLRMNNSATKHIGQISFKCEICSKGFQSLSDLEMHYVIHSDEKLCKCEICSKCFKNQSYLKEHNRLHTNEKLFKCKVCSKCFTNSSNLKIHFRIHTNERPFKCGICSKCFRTSGHLKIHVRSHTGERPFKCGICSKCFTQSSHLNRHVETHTGEKPFKCEICSKCFHNSTNLNIHMRIHTGEKPSKCEICSKCFTQSGDLKKHIRIHTGEKPYKCEICSKCFIKSYDLKRHTRTHTDNKPFKCEYCSKCFTANRRLKQHIIRDHTGEKAFKCEICLKCYKLQNDLKLHIRTHSEEKPFKCKFCSKCFTGQSNLIRHVKTHTGEKPFKCEICSKCFTRQSDLKQHIRIHTGEKPFKCEICLKCYTQSGDLKKHIRIHTGEKPYRCEICSKCFTNQSTLKRHIRIHIDKKSFKCEICSKCFTDQSNLKQHIRFHTGEKPFKCEICSKCFTEQSNLKQHIRFHTGEKPFKCNICSKCFTQSRSLKTHIRTHTDEKEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056804;
90% Identity: iTF_00056817;
80% Identity: iTF_00056804;