Avir004469.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001737:86444-93155[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.31 24 5.1 0.0 21 44 199 222 197 229 0.90 2 8 0.02 1.6 8.9 0.0 21 48 312 339 305 343 0.87 3 8 0.021 1.7 8.8 0.1 21 48 340 367 336 373 0.89 4 8 0.0035 0.28 11.3 0.2 21 46 454 479 448 486 0.87 5 8 2.5 2e+02 2.2 0.1 21 45 539 563 534 571 0.84 6 8 4.3 3.4e+02 1.4 0.1 20 47 566 593 559 598 0.70 7 8 0.051 4.1 7.6 0.0 21 46 595 620 584 625 0.89 8 8 0.16 13 6.0 0.1 22 46 624 648 621 653 0.87
Sequence Information
- Coding Sequence
- ATGGATCGTATGAAAGAAGCATCAAATCCATTAATGAATATCGAAATCGAAAGTAATCCTAAAGAATTGTTATCTACGATTAAAACCGAAGAAATTGAAATTGAAGAATGTAAACTCAAACTTGAGAACTTTTATGTGATCAAAAGGGAAAGTTCTGTAGAAAAAGTTTCTTCAACTAAAAGCAATGTTGTGTTAATAAGCAAAGACAATATAAAAACTGAAAATGTTGATTTAAATGCGGATATTGACGAAAGAAAATGTGATATCGAAATTAAAACAGAAGATGCATTTGATTTCCATGCAAATGTTATCCATGATTTTGTTGAAAATCGACAAACAAGGCAAACAATTAAAATGTATTCTAAGAAAAAAAGTTTCCTATCTGCGGCGAAAAAATGGTCTCATCATTTTGGGAAATTCAATGGAATATGTTTGTATTGTGGACAATTTTTTTGTGATAAATTGTTATTTTTACATCATTTTAGTATTTATCACTTTGTAGGTAAATCTAAAAAATCTGTTGATTTGAGAATGAATAATTCAAAATGTTTCACAAATTCTAGTAGTTTCAAAATCCATTTTAAACTTCTCACTAGCAAGAGACCTTTTAAATGTGAAATTTGTGCAAAATCTTTTATAAAATCTAATGATTTAAAAAGGCATACTACAACTCACACTGGCAAAAAAACTTTTAAATGTGGATATTGTTCAAAGTGTTTCACAGAAAATGGAATCTTAAAACAGCATATTATTAGAGATCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTCTAAAATGTTTCACACTACAAAATGATCTAAAACTACATATTAGAACTCACAGTGACGAGAAACTTTTTAAATGTAAATTTTGTTCAAAATGTTTCACAGGACAAAGTCATTTAAATCGACATGTTAAAACTCATACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATATTTCACACAATCCGGTGATTTAAAAAAGCATATTAGAATTCACACTGGTGAAAAACCGTTCAGATGTGAAATTTGTTCAAAATATTTCACACAATCCAGTAGCTTAAAAAAACATATTAGAACAACTCACACTGGCGAAAAACCTTTTAGATGTGAATATTGTTCAAAGTCTTTCACAGAAAAAGGAATCTTAAAAAATCATCTTATTAGAGATCACATTGGTGAAAAGTCATTCAAATGTGAAATTTGTCTAAAATGTTTCACACTACAAAATGATTTAAAACTACATATTAGAACTCACACTGCCGATAAACCTTTTAAATGTAAAATTTGTCCAAAAGGTTTTCAAAGAGCTGGTCATTTAAATATGCATATTAAAATTCACACTGGTGAGAAACCTTATAAATGTGAAATATGTTCGAAATGTTTCACACAATCCAGTGATTTAAAAAGGCATATTAGAACTCACACTGGCGAAAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACAGAAAATGGAAGCTTAAAACAGCATATTATTAAATATCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTCTAAAATGTTTCACACTACAAAATGATTTAAAACTACATATTAGAACTCACACTGCAGATAAACCTTTTAAGTGTGAAATTTGTTTAAAATGTTTCAAAAACCAAAATTATTTAAAACAGCATATTAGAAGTCATACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTTACAGTATTTAGTATATTAAAAAGTCATATGAGAATTCACAATAACGAGAAACCTTTTAAATGTAAATTTTGTTCAAAATGTTTCACACAATCTAGTAATTTAAAAATTCATGTTAAAATTCACACTGGCGAGAAAGCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATAACATCAAGTAATTTAAAACGCATACTAGAACTCATACTGGTAAAACCTTACAGTTGTGAGATTAGTTCAAAATGTTTCTCACGAAAAAATGATTATAAAAATCATATGAGAATTTACACTGATGAGAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCGCATTACAAAGCAACTTAA
- Protein Sequence
- MDRMKEASNPLMNIEIESNPKELLSTIKTEEIEIEECKLKLENFYVIKRESSVEKVSSTKSNVVLISKDNIKTENVDLNADIDERKCDIEIKTEDAFDFHANVIHDFVENRQTRQTIKMYSKKKSFLSAAKKWSHHFGKFNGICLYCGQFFCDKLLFLHHFSIYHFVGKSKKSVDLRMNNSKCFTNSSSFKIHFKLLTSKRPFKCEICAKSFIKSNDLKRHTTTHTGKKTFKCGYCSKCFTENGILKQHIIRDHTGEKSFKCEICLKCFTLQNDLKLHIRTHSDEKLFKCKFCSKCFTGQSHLNRHVKTHTGEKPFKCEICSKYFTQSGDLKKHIRIHTGEKPFRCEICSKYFTQSSSLKKHIRTTHTGEKPFRCEYCSKSFTEKGILKNHLIRDHIGEKSFKCEICLKCFTLQNDLKLHIRTHTADKPFKCKICPKGFQRAGHLNMHIKIHTGEKPYKCEICSKCFTQSSDLKRHIRTHTGEKPFRCEYCSKCFTENGSLKQHIIKYHTGEKSFKCEICLKCFTLQNDLKLHIRTHTADKPFKCEICLKCFKNQNYLKQHIRSHTGEKPFKCKICLKCFTVFSILKSHMRIHNNEKPFKCKFCSKCFTQSSNLKIHVKIHTGEKAFKCEICSKCFITSSNLKRILELILVKPYSCEISSKCFSRKNDYKNHMRIYTDENLLNVKFVQNVSHYKAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056829;
- 90% Identity
- iTF_00056829;
- 80% Identity
- iTF_00056829;