Avir000913.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- Lztr1
- Assembly
- None
- Location
- GWHAMMQ00001098:178643-182641[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.6e-09 1.4e-06 28.4 0.0 3 108 354 491 352 493 0.88 2 4 0.073 22 5.2 0.2 77 109 492 524 490 525 0.88 3 4 5.9e-17 1.8e-14 53.8 0.0 8 103 585 682 580 689 0.82 4 4 1.2 3.6e+02 1.4 0.0 76 101 687 712 682 720 0.79
Sequence Information
- Coding Sequence
- ATGTCTAGTCTGACTTCAGGAGATGCAAGTGCCCTAACTCTTGAAGTCGGACCTTTCGAAACAGTACATAGATGGAAACGAATGCCTGAATGTGATGAGTTTGTAGGCGCTAGACGAAGTAAACATACGGTCGTTGCATATAAAGAAGCCATCTATGTATTTGGTGGTGATAATGGAAAAAGTATGCTGAATGACTTGCTACGATTTGATGTTAAAGAGAAAAGTTGGGGTAGAGCTTTTGCCACTGGTACACCACCTGCACCAAGGTATCACCACTCAGCTGTTGTTCATAACAGCTCAATGTTCGTTTTTGGTGGATACACCGGAGATATTCATTCTAATTCAAATTTGACTAATAAAAATGATCTTTTTGAATACAAATTTACATCTGGACAATGGATAGAGTGGAAATGGTATCCAGGCCCTAATCCTGTTCCTAGATCAGCTCATGGAGCTGCAATATTCGATAACAAACTTTGGATTTTTGCTGGCTACGATGGAAATGCCAGACTGAACGATATGTGGACGATTTCTCTCCTGGGAGAGGCTAAAATTTGGGAAGAAGTCAATCAAAAAGGAGAATGTCCACCAACATGTTGTAATTTTCCTGTTGCTGTTGCAAGAGATTGTATGTTTGTATTTAGTGGACAGAGTGGTGCCAAAATTACCAATTCGCTTTTTCAATTTAATTTTATCGATAAAATATGGACTAGAATTTCGACTGAACACATACTTCGAGGAGCACCTGCACCACCAGCACGTCGTTACGGACATACAATGGTTGCCTTTGATCGTCATTTATATGTTTTTGGTGGTGCAGCAGATTCAACGCTTTCCAATGATTTACATTGTTTCGATTTAGATTCACAGAAGTGGTCAATAGTTTTACCAGATCCTGAATCTTTCGTACCTTCTGGTAGATTGTTTCATGCAGCAGCTGTAGTTGGCGATGCTATGTTTATATTTGGAGGAACTGTTGATAATAATGTTAGAAGTGGCGAGATGTATAGATTTCAATTTTCGACTTATCCAAAATGTACACTTCATGATGATTATGGTAAATTATTAGAAACTAGAATGTTTTGTGATGTTAGATTCCTGGTAGGTCCGGAAGAAGAAAAAATAACTGGTCATGTAGCTTTAGTAGCAGCTCGATCTGGTTATTTGAGAAATAAAATTCGAGTAGCCAGAGAAAACAGAGATAGACATCTTGAAAATTTGTTCGGTACAGTAAATGTTCCTTTCACGGATATTCCATTGTTGGATGTTAAATTACCAGATGCTAATGCTGAAGCATTTGAAATGGTTTTAAATTATATTTATATGGATTGTATTGATCCTACTCGACAATCTAGAGAAGATGAGGATCCATTTTCAAATAGAATTGTTCTTAGAATGATGGATGTTTATAGATTAGCAGTTCAATTTAATATGGCACGTTTAGAGCATCTTTGTGTACAATATCTTAATGCTACAATTTGTTTAAAAAATGTTTTGGTAGCATTACATAATGCACATCAACTTCAATTAGATTTTATTAAAGAACATTGTTTACGATATATTGTAAAAGAAAGTAATTACAATCAAATTGTAATGAGTTCTGAATTTGAATCTTTAGAAAGGAATCTAATGGTGGAAATTATACGAAGAAAACAAATGCCTCAATATAAGGCCAATACAGAAGCGCATTTTGACATAGCAGCCGGGGGTTCCCTGGAACAAGATATGGCAATGTTTTTAAGAGTAACTGGTAAAGAATTCTGTGATATTGATTTAAAATTAGATGGAAATTTGATATCTGCACATAAAGCAATTTTAGCTGCGAGATGTGCTTATTTTGAAGGAATGTTTAGATCGTTTATGCCAGCTGATAGTACAGTTAATATACAAATTGGAGAATTAATTCCTTCTAAAGAATCTTTCGATTCTCTGTTACGTTATATATATTATGGTGATGTTAATATGCCACCGGAGGATTCTTTGTATCTATTTTCGGCACCATATTTTTATGGTTTCCATAATAATCGATTACAAGCTTTTTGTAAACAAAATCTCGAAATGAACGTTACTTTTGAAAATGTGATTCAAATTCTTGAAGCTGCTGATAAAATGAATGCGACAGATATGAAAAAATATGCATTAGATCTTATTGTACATCATTTTACTAAAGTGGCTAAGTTACCGAAATTACGGTTACTGAGTAAAGAATTGATTTTGGATATTTTGGAAGTGTTAGCTGAAAGTATGGAACAAGCAAATATGAGAAACGATGTGTCGAATAGTTTGGCTCATTTGGATCCGTGA
- Protein Sequence
- MSSLTSGDASALTLEVGPFETVHRWKRMPECDEFVGARRSKHTVVAYKEAIYVFGGDNGKSMLNDLLRFDVKEKSWGRAFATGTPPAPRYHHSAVVHNSSMFVFGGYTGDIHSNSNLTNKNDLFEYKFTSGQWIEWKWYPGPNPVPRSAHGAAIFDNKLWIFAGYDGNARLNDMWTISLLGEAKIWEEVNQKGECPPTCCNFPVAVARDCMFVFSGQSGAKITNSLFQFNFIDKIWTRISTEHILRGAPAPPARRYGHTMVAFDRHLYVFGGAADSTLSNDLHCFDLDSQKWSIVLPDPESFVPSGRLFHAAAVVGDAMFIFGGTVDNNVRSGEMYRFQFSTYPKCTLHDDYGKLLETRMFCDVRFLVGPEEEKITGHVALVAARSGYLRNKIRVARENRDRHLENLFGTVNVPFTDIPLLDVKLPDANAEAFEMVLNYIYMDCIDPTRQSREDEDPFSNRIVLRMMDVYRLAVQFNMARLEHLCVQYLNATICLKNVLVALHNAHQLQLDFIKEHCLRYIVKESNYNQIVMSSEFESLERNLMVEIIRRKQMPQYKANTEAHFDIAAGGSLEQDMAMFLRVTGKEFCDIDLKLDGNLISAHKAILAARCAYFEGMFRSFMPADSTVNIQIGELIPSKESFDSLLRYIYYGDVNMPPEDSLYLFSAPYFYGFHNNRLQAFCKQNLEMNVTFENVIQILEAADKMNATDMKKYALDLIVHHFTKVAKLPKLRLLSKELILDILEVLAESMEQANMRNDVSNSLAHLDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01186316;
- 90% Identity
- iTF_00735917; iTF_01047533; iTF_00387384; iTF_00792317; iTF_00911182; iTF_01106471; iTF_00459064;
- 80% Identity
- -