Ates013394.1
Basic Information
- Insect
- Aleiodes testaceus
- Gene Symbol
- MBD-R2
- Assembly
- GCA_963565655.1
- Location
- OY751424.1:4060093-4065867[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-19 1e-15 57.2 0.3 8 69 488 549 482 556 0.93 2 2 1.7 4.8e+03 -2.6 0.0 41 58 1083 1100 1083 1109 0.84
Sequence Information
- Coding Sequence
- ATGGCGCGTAAATGCTgcgtgaaaaattgtaataccAATGCTAAAGCAGTTAATAAATATGGATTGAGACTGCACAAATTTCCCAAggattcattgataaaagcCAAGTGGTTTGATAATTGTCGGATTGATACCGATTGCCGGGCAACACCTGGCCCATTTATATGTTACAAACACTTTAAAAGAAGTGATTATGATATTATTAAGGGACACAAGTATTTGCTCAAGGAAAATGCTGTGCCGAGTGTTTTCGAGGACTACGACGATCATCCTGATCCTATAATAATGCCAGTGAAGACACGAAACGTCTCGTATCCTCAAGAAGATCTtgatctcattaattcaaagacAAATAATGTTGATGAAAGAACCGATGGGATTGATTCCCCTGGTTACAACGACAGCTGCGGGGAAGCTTGTAATTCGAGACCACAATCTTCTGCTGATTCTCTGAATCCATCGGAGAGCCAGGATGATAACGAGGCAACTGGGAAGTTATTAGATATTGAATGTGAGATGGAGAAAGTTAAGAAGAgtgaattcaaagaatcaCCACCGGCTGAACCACCTCCAATTGATTCAtctctcaataaaattaagaatatcaataaaatggagaatattgTTAAGAAGGATAAGAAAGTGTCTAGGGgagatttaaaattttttcctGGTGCCAAATTAGAGGCTAAAGACTTCAATGATCAGTGGTATGCGGCAAGAGTCGTTGAGACTGACTGGGTAGAAAGGGAAGTATTGATACATTTCGACAAGTGGAATTCAAGATTTGATGAGTGGATACCAATGGATAGCTCAAGGCTCAGGGTACTGCAGATGCAGCCTAGtgaacaaGATTGGGTCATTGCAACTCCGGAGACAAAACCCCGAGATTTTTCAGTTGGCGAGAGAATATTAGCGACGTGGGCAGATGGCAGAAAGTATCCAGCCAAAGTAAAGGCACTCATGGGAAATgatCGTTACGACGTATTATTTGACGATGGTTATTCGAAGGTTTTACGCTCCTCAAAGATGACTAAAATTGCTGGAACATTGGACAAGTCAAGTGCACAGCAACAATCAGCGATGGAGGCTGAATCTTACATTGGTAGCAAGCAAGAGAGAAGAGACAAGAAAAGGAAGCATACAGTGACGGAATTATTTAACAGCAGGAAACGTACAAAAACAGAGAGTGAAAGATCATCGAAGAAAGAAGATAATCAAGATGAGAATGAAACGGAAATTCATGAAGCTAATGGCAGTGGAAGTTATGATTCTGGTGCAGAGATGCTGAAGGGTTTTCCAaatcagaagaaaattaagaatttcacgaaaaggaagagagagtaTCAGAAGGTTGATACTGATCAGGAAGATGACGTTGGTCCTGAGTGGGTTGATGGAGAACCACAGGGAATCGAGTCATTCACAACTGATGGCTCGAGAAGATCAATAATTGTGCCTGATAGAAGATTACCACCTGGATGGCAGAAGCATTTTGTCCAGAGGAAAACAGGAAGTTCTGCTGGGAAGTGGGACGTTCTTTTTGTCCAcaaattgagtggaaaaaagttcAGATCGAGGAATGACTTGAAGACGTACTTCGAGAGCCAGGGACAAACGAATTTCAATCCTGAGATGTTTGACTTCTGCATACATCGTAAGAAGAAGGCAGGAGGTGCAAAGAATCAGACACCAAAGCCGGAGAGTCCTGTTGAGACTCCGAAGAAGATTAAGACACTTTTACCGAAGACTAAAGCAAATCCTGGTACTGCTGATAATCTTCTGTTAACGCCTGTAACATCGGCACTTGCACAGACACCTACGCCTTTGCCAGCGGCTGCACCTATTGATGACAGTGCGGTGTTTATCGGAGGCCTGCGAGTGGAAATGGAGGACAGTGCCTACAAGTGTCCCATCGAAGGCTGCACCAAGACCTTCCGCAAGGAGAATCTCCTCCAGATGCATATTAAACATTATCACAAAGAATACTCGCAATTCGTTGGATCAACACCAAACGTCGCTGATCTAGCATACGCAAGAACAATTGGCGAATCAATTCAAGATGTTACCccgaaaaaaacgaatgaaaaacgTAAATCACTTCATGAGAGACCACTTCATTCACTCACAATGTCACCCTTAACTACTTCGattctcgataattcattGACAGATAATGGGAttgttgatggaaaattggagatgATGTCACCAACGTCAAACAGTAGCATGGACGTCACTGATGATGGTGCACATAAGAGTGAGTGTGCTATGTCACCAGGTTCACTCTTTGatatgaaaataagagaggaaaaaacgcAGACTGGAATTAAAACACTGCTGCCAGTCAGACCGAGTAATAGCACTGATTCGCAGAGGATTGATAGGTCTAAATCATTGGATGATGGTGGTAATTTCGAGAAGATCAAGGGACAGAGAAAGAGGCAATTGTCGGAGTACAGTTCGGATGCATCGACAAAGAGCAGAAAACCGAAAGGCATGCAGGAGCTTACTGATGAATATGGAGACTTGGATGACAGTGCACTTGATGCTGAGGGGCCAGCTGGACTCGTTTACAGATACAGTCGTAGGAAATCAGATGCTAAGAGCGACGATAATAGTCAGAGCAATGGTGATGgtgtgatgatgatgataaacgGGGAGCTGGTGAAAGTGGAGCAGTTGAAACGAGAAGAGATAATCAATTGTACCTGCGGAATAACAGAGGAGGATGGGCTCATGATCCAGTGTGACCTCTGCCTCTGCTGGCAGCATGGACACTGTAATGCGATTGAACGTGAGCGAGACGTTCCTGACAAGTACATCTGCTACATCTGCCGCAATCCTTTCCGAGGAAGACAGTCAAAGAAATACTCGCACAATCAGGATTggataaaagaaggaaaactGGAGAGTCTGTCGAAGAGAACGAAGAATCAAGAGGCCATTAATCACAGAACTGCTGTTCTGAAGCGCTCGTATGATCTAGTTGGTGCATTAATAGAGATTCAGCGGATTCTTCATAGTCTGAGGGTCAAAATCAATGTTGTACAGAAGAAAGATCATCCCAAGCTCTATTTATGGgcgaaaaattgggaaaagaGTGAAATACCAGAGCCTCAGCTGGAGCCAGTgccaattattgaaataataacacCGAAAACGGTTGTCGACGAGGCGGCAGCTGAATTGCcagtgaaaaatgaggagagtgatgataaaaatgaaattaaacgtGAAGATGATAAACAAATTTCTTCGGAttcggaattaatgaaaatacttgaGGAAGATAATTCTGTGATAAATGAGGCGAAGGttaattgtaaaaaagaggaggatgaGGGGAAGAATGATGGGAGGATACTGCTCGATGCTCTGACTAGGAGCGAAGATGATAAGAAAGGGGAGGAGGTTAAGAGAGAGGGCGATGGAGCGGATGGGGAACCAGGTGTGCCTTTGGAGGAGACGATTAAGAAGCTACAGCCGTTTGTACCGGAGCCGGAAGCACCGATCGATCCTGATGAGTGTCGGCTCAGGCTCTTGGAGCATATTGAACACTTTCAGGATCACATTGATGCACAATTGGCGACGATTGAAGCACAAGTTGATGCACTTGAGACAATGGAGCCAACTGATGATAGATCATCTGATGTACAGCCACGTATGAAGCAGACCATACAAATGCTAATGAGGGATCTTGCTACAGTACGAAAATTGGCTGCTCTATGTTGA
- Protein Sequence
- MARKCCVKNCNTNAKAVNKYGLRLHKFPKDSLIKAKWFDNCRIDTDCRATPGPFICYKHFKRSDYDIIKGHKYLLKENAVPSVFEDYDDHPDPIIMPVKTRNVSYPQEDLDLINSKTNNVDERTDGIDSPGYNDSCGEACNSRPQSSADSLNPSESQDDNEATGKLLDIECEMEKVKKSEFKESPPAEPPPIDSSLNKIKNINKMENIVKKDKKVSRGDLKFFPGAKLEAKDFNDQWYAARVVETDWVEREVLIHFDKWNSRFDEWIPMDSSRLRVLQMQPSEQDWVIATPETKPRDFSVGERILATWADGRKYPAKVKALMGNDRYDVLFDDGYSKVLRSSKMTKIAGTLDKSSAQQQSAMEAESYIGSKQERRDKKRKHTVTELFNSRKRTKTESERSSKKEDNQDENETEIHEANGSGSYDSGAEMLKGFPNQKKIKNFTKRKREYQKVDTDQEDDVGPEWVDGEPQGIESFTTDGSRRSIIVPDRRLPPGWQKHFVQRKTGSSAGKWDVLFVHKLSGKKFRSRNDLKTYFESQGQTNFNPEMFDFCIHRKKKAGGAKNQTPKPESPVETPKKIKTLLPKTKANPGTADNLLLTPVTSALAQTPTPLPAAAPIDDSAVFIGGLRVEMEDSAYKCPIEGCTKTFRKENLLQMHIKHYHKEYSQFVGSTPNVADLAYARTIGESIQDVTPKKTNEKRKSLHERPLHSLTMSPLTTSILDNSLTDNGIVDGKLEMMSPTSNSSMDVTDDGAHKSECAMSPGSLFDMKIREEKTQTGIKTLLPVRPSNSTDSQRIDRSKSLDDGGNFEKIKGQRKRQLSEYSSDASTKSRKPKGMQELTDEYGDLDDSALDAEGPAGLVYRYSRRKSDAKSDDNSQSNGDGVMMMINGELVKVEQLKREEIINCTCGITEEDGLMIQCDLCLCWQHGHCNAIERERDVPDKYICYICRNPFRGRQSKKYSHNQDWIKEGKLESLSKRTKNQEAINHRTAVLKRSYDLVGALIEIQRILHSLRVKINVVQKKDHPKLYLWAKNWEKSEIPEPQLEPVPIIEIITPKTVVDEAAAELPVKNEESDDKNEIKREDDKQISSDSELMKILEEDNSVINEAKVNCKKEEDEGKNDGRILLDALTRSEDDKKGEEVKREGDGADGEPGVPLEETIKKLQPFVPEPEAPIDPDECRLRLLEHIEHFQDHIDAQLATIEAQVDALETMEPTDDRSSDVQPRMKQTIQMLMRDLATVRKLAALC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00048010; iTF_00046146; iTF_00047023; iTF_00046199; iTF_00046975;
- 90% Identity
- iTF_00048010; iTF_00046146; iTF_00047023; iTF_00046199; iTF_00046975;
- 80% Identity
- iTF_00048010;