Aalt015108.1
Basic Information
- Insect
- Aleiodes alternator
- Gene Symbol
- MBD-R2
- Assembly
- GCA_963921955.1
- Location
- OY998107.1:4215497-4226818[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-19 1.8e-15 56.9 0.2 8 69 492 553 486 560 0.93 2 2 1.8 1e+04 -3.2 0.0 41 58 1089 1106 1089 1114 0.84
Sequence Information
- Coding Sequence
- ATGGCGCGTAAATGCTGCGTTAAAAATTGTAATACCAGTAGTAAAACAAGCAATAAATATGGTTTGAAACTTCACAAATTTCCAAAGGATTATTTGATAAGGGCTAAGTGGTTTGATAATTGTAGAATTGATAATGATTGCCGGGATGTGCCTGGGCCATTTATATGCTACAAACACTTTAAAAGAAGTGATTATGATATTGTTAAGGGACACAAGTATTTGCTTAAGGAAAATTCTGTGCCAAGTGTTTTTCAGGACTACGACGATCATCCTGATCCAATAATAATGCCAGTGAAGACACGAAACGTTTCATATCCTCAAGAAGATCTTGATCTCATAAATTCAAAGACAAACAATGTTGATGATAGAACCGATGGGATTGATTCTCCCGGTTACAACGACAGCTGCGGGGAAGCATGTAACTCGAGACCACAATCTTCTGCTGATTCTTTGAATCAATCAGAGAGCCAGGATGATAACGAGGCAACTGGTAAATTATTAGATATTGATTGTGAGATGGAAAAAGTTAAGAAGAGTGAGTTTAAAGAGTCACCACCAGCTGAACCGCCTCCAGTTAATTCATCTGTTAATAATCAAATGAATAATGTCAATAAAATGGAGAATACTGTTAAGAAAGACAGTAAGACAACAAAAGTGTCTAGGGgagatttgaaattttttcctggTGCCAAATTAGAGGCTAAAGACTTCAATGATCAGTGGTATGCGGCAAGAGTCGTTGAGACTGACTGGGTAGAAAGGGAAGTATTGATACATTTCGACAAGTGGAATTCGAGATTTGATGAGTGGATACCAATGGATAGTTCGAGGCTCAGGGTACTGCAGATGCAGCCTAGTGAACAAGATTGGGTCATTGCAACTCCGGAGACAAAACCCAGAGAATTTTCAGTGGGCGAAAGAATATTAGCAACATGGGCAGATGGAAGAAAGTATCCAGCCAAAGTAAAGGCACTAATGGGCAATGatCGTTACGACATATTATTTGATGATGGTTATTCAAAGGTTTTACGCTCCTCGAAGATGACTAAAATTGCTGGAACATTGGACAAGTCAAGTGGACAGCAATCAGGTATGGAGGCTGAATCATACATTGGTAGCAAGCAGGAGAGGAGAGACAAGAAGAGAAAGCACACAGTGACTGAATTATTTAACAGCAGAAAACGTACAAAAACAGAGAGCGAGAGATCATCAAAGAAAGATGATAATCACGATGAGAATGAAGCAGAAATTCATGAAGCTAATGGCAGTGGAAGTTATGATTCTGGTGCTGAGATGCTGAAGGGATTTCCAAATCAAAAGAAGATCAAGAATTACACGAAAAGGAAGAGAGAGTATCAGAAAGTTGATACTGATCAGGAATATGATGATGTTGGTCCTGAATGGGTTGATGGTGAACCACAGGGAATCGAGTCATTCACTACTGATGGCGCGAGAAGATCAATCATTGTGCCTGACAGAAGACTACCACCTGGTTGGCAGAAGCATTTTGTCCAGAGAAAGACCGGAAGTTCTGCGGGAAAATGGGACGTCCTTTTCGTTCACAAATTGAGCGGCAAGAAGTTCAGATCGAGAAATGACTTGAAGACGTACTTCGAGAGCCAGGGAATGACGAATTTCAATCCTGACATGTTCGACTTCTGCATACATCGCAAGAAAAAGGCAGGTGCAAAGAATCATACGCCAAAGCCGGAGAGTCCGGTTGAGGTGCCAAGGAAGATCAAGACACTTTTGCCAAAAACTAAGGCGAATGCTCCGGCTAGTACTGCTGATAATCTTCTGTTGACTCCTGTGACATCGGCTCTGGCTCAGTCATCACCTGCGCCTTTGCCAGTGGCTACGCCCATTGATGACAGTGCTGTGTTTATCGGAGGCCTGCGAGTAGAAATGGAGGACAGTGCTTACAAGTGTCCAATTGAAGGCTGCAGCAAGACCTTCCGCAAGGAGAATCTCCTCCAAATGCACATCAAACATTATCACAAAGAGTACTCACAGTTTGTTGGATCAACACCAAATGTCGCTGATTTAGCATACGCAAGAACAATAGGCGAATCAATTCAAGATGTTActcccaaaaaatcgaatgaaaaacGTAAATCACTTCATGAGAGGCCACTTCATTCAATTACAATGTCACCATTGACTACTTCCATTATCGATAATTCATTGACTGATAATGGAGTTGttgatggaaaattggaaatgatGTCACCGACATCGAACAGCAGCATGGATGTCACGGACGATGGTGCACATAAGAGTGAGTGCGCTATGTCACCAGGCTCACTGTTTGATATGAAgataagagaagaaaaaacgcAGACGGGAATTAAAACATTGCTACCAGTTAGACCGAGTAATAGTGATTCGCAGAGGATTGATAGGTCGAAATCGTTGGATGATGGAggcaattttgagaaaatcaagGGACAGAGGAAGAGGCAATTGTCGGAGTACAGCTCAGATGCTTCGACGAGGAGCAGAAAACCGAAAGGCATGCAGGAGCTTGCTGATGATTATGGCGATTTAGATGACAGTGCATTGGATGCTGAAGGACCAGCTGGACTTGTTTACAGATACAGTCGTAGGAAATCAGATGCTAAGAGCGACGATAATAGTCAGAGCAATGGTGATGGTGtcatgatgatgataaatggTGAACTGGTAAAAGTGGAGCAGTTAAAACGTGAGGAGATAATCAATTGTACCTGCGGAATAACGGAGGAGGATGGTCTGATGATTCAGTGTGATCTCTGTCTTTGCTGGCAGCATGGTCATTGCAATGCAATTGAGCGTGAGCGTGATGTTCCAGACAAGTATGTATGCTACATTTGCCGCAATCCTTTCCGTGGAAGACCATCCAAGAAGTACTCGCACAATCAGGACTGGataaaagagggaaaattggAGAGTTTGTCGAAACGAACGAAAAATCAAGAGGTGATTAATCACAGAACGGCTGTTTTAAAGCGTTCGTATGATCTAGTTGGTGCATTGATCGAGATTCAGCGAATTCTTCACAGTTTGAGGGTAAAAATAAACGTTGTACAGAAGAAAGATCATCCAAAGCTCTATTTATGGgcgaaaaattgggaaaaaagcGAAATTCCGGAGCCGCAACTGGCGCCAGTGCCAATAATCGAGATAATAGCACCAAAACCAGCAGCGATCGATGAAGCAGCTGTTGAATTACCACTGAAGAATGaggaaattgatgataaagaTGAAATTAAACGCGAAGTAGATAAACAAATATCATCGGATtcggaattaatgaaaatacttGAGGAAGACAGTTCTGTGATAAATGAGGCGAagattaattgtaaaaaagaggaggatgaggaaaaaaatgatgggaGAATACTGCTCGATGCTTTGACTAGAAGCGAAGATGAGAAGAAGGGGGAGGTGGTGAAGGGAGAGAGTGAGGGCGATGGAGATGTTGAAGCAGGTGTGCCTTTGGAGGAGACGATTAAGAAACTACAGCCATTTGTACCGGAACCGGAAGCACCGATTGATCCGGATGAGTGTCGGCTGAGGCTCTTGGAGCACATTGAACACTTTCAGGATCATATTGATGCACATTTGGCAACGATTGAAGCACAAGTTGATGCACTGGAGACAATGGAGCCAACCGATGATAGATCATCTGACGTACAACCACGTATGAAACAGACCATACAAATGCTATTGAGAGATCTTGCAACAGTACGAAAGTTGGCTGCTCTTTGTTGA
- Protein Sequence
- MARKCCVKNCNTSSKTSNKYGLKLHKFPKDYLIRAKWFDNCRIDNDCRDVPGPFICYKHFKRSDYDIVKGHKYLLKENSVPSVFQDYDDHPDPIIMPVKTRNVSYPQEDLDLINSKTNNVDDRTDGIDSPGYNDSCGEACNSRPQSSADSLNQSESQDDNEATGKLLDIDCEMEKVKKSEFKESPPAEPPPVNSSVNNQMNNVNKMENTVKKDSKTTKVSRGDLKFFPGAKLEAKDFNDQWYAARVVETDWVEREVLIHFDKWNSRFDEWIPMDSSRLRVLQMQPSEQDWVIATPETKPREFSVGERILATWADGRKYPAKVKALMGNDRYDILFDDGYSKVLRSSKMTKIAGTLDKSSGQQSGMEAESYIGSKQERRDKKRKHTVTELFNSRKRTKTESERSSKKDDNHDENEAEIHEANGSGSYDSGAEMLKGFPNQKKIKNYTKRKREYQKVDTDQEYDDVGPEWVDGEPQGIESFTTDGARRSIIVPDRRLPPGWQKHFVQRKTGSSAGKWDVLFVHKLSGKKFRSRNDLKTYFESQGMTNFNPDMFDFCIHRKKKAGAKNHTPKPESPVEVPRKIKTLLPKTKANAPASTADNLLLTPVTSALAQSSPAPLPVATPIDDSAVFIGGLRVEMEDSAYKCPIEGCSKTFRKENLLQMHIKHYHKEYSQFVGSTPNVADLAYARTIGESIQDVTPKKSNEKRKSLHERPLHSITMSPLTTSIIDNSLTDNGVVDGKLEMMSPTSNSSMDVTDDGAHKSECAMSPGSLFDMKIREEKTQTGIKTLLPVRPSNSDSQRIDRSKSLDDGGNFEKIKGQRKRQLSEYSSDASTRSRKPKGMQELADDYGDLDDSALDAEGPAGLVYRYSRRKSDAKSDDNSQSNGDGVMMMINGELVKVEQLKREEIINCTCGITEEDGLMIQCDLCLCWQHGHCNAIERERDVPDKYVCYICRNPFRGRPSKKYSHNQDWIKEGKLESLSKRTKNQEVINHRTAVLKRSYDLVGALIEIQRILHSLRVKINVVQKKDHPKLYLWAKNWEKSEIPEPQLAPVPIIEIIAPKPAAIDEAAVELPLKNEEIDDKDEIKREVDKQISSDSELMKILEEDSSVINEAKINCKKEEDEEKNDGRILLDALTRSEDEKKGEVVKGESEGDGDVEAGVPLEETIKKLQPFVPEPEAPIDPDECRLRLLEHIEHFQDHIDAHLATIEAQVDALETMEPTDDRSSDVQPRMKQTIQMLLRDLATVRKLAALC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00047963;
- 90% Identity
- iTF_00047963;
- 80% Identity
- iTF_00046199;