Agra011458.1
Basic Information
- Insect
- Aldrichina grahami
- Gene Symbol
- retn
- Assembly
- None
- Location
- Contig76:1052399-1129052[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-26 6.1e-23 80.5 0.0 2 89 262 347 261 347 0.96 2 2 2.8 5.8e+03 -2.7 0.2 8 29 490 510 481 528 0.56
Sequence Information
- Coding Sequence
- ATGCAACTAAATACCATGGACTGCACCGGGCGTTCAAATTTAAATGAACGTGATTCGGAGCTGGGGGATGATATGTCACATGATGACCATTCCGATGATGAAATGCGTGACTGTGATTCAGTAGAAGGAGATCACATCTCTAGAGTAGGATCGCGCTTAAACACATCCATGACAAGTAACGGAGCGGGAACTGTCGGTGATATGAGTGGACCTGATCACCCCAATGATATGGCCATGAGTCATCATCATCAATTTCCATCAAACCACCCTTTGAATGCCTTGGGTAGTTTCATGGGAATCGGTAGTTTGCACGGTATTCCAAATTTGCAGCACAATGATGTCTTAGAGAAACTTAAAATGCAAGTACGTGATATGAAAGTGGGCCTAATGGATCAAGAATATGCTGCGGCGCATGCAGCTGCATTTGGATCAAATGTTTTGCCAACACCAATAAATACAGCATTCACAATACCACCCACAACAATGGCATCATTCACACATGCCGCACAGACTCTGGCTGCTCAAGCCGGTAACAATATAAATTCACATTTGAATGTAAATTCTTCATCGTCTTCGTTGGGAGGACAATCAGTACCCAATGGCAGTCATAATAGCTTTTCCTTTACCTCCCCAACGGCACCCAGTTCAAAAGATGTAAATCCTGCCTCGAATTCATCAACATCAAGCGAAACATCAAATTCTTCACAACAGAACAATGGCTGGAGCTTTGAAGAGCAATATAAACAAGTTCGACAGTTGTACGAGATCAATGATGATCCGAAGCGTAAAGAGTTCCTTGATGATCTGTTTTCATTTATGCAAAAAAGAGGCACACCCATCAATCGCTTACCAATAATGGCAAAATCAGTGTTGGATCTTTATGAACTGTATAATTTAGTGATTGCTCGAGGAGGTCTCGTCGATGTTATTAACAAAAAGCTGTGGCAGGAAATCATAAAGGGACTTCACCTGCCATCGAGTATAACAAGTGCAGCGTTCACACTACGTACACAATATATGAAATATTTGTATCCATATGAATGCGAGAAGAAAAATCTAAGTACGCCAGCAGAATTACAGGCTGCAATTGATGGCAACCGCCGGGAAGGACGTCGATCCAGTTATGGTCAATATGAGGCAATGCACAATCAAATGCAAATGCCTCAAATGGCTCGTCAATCTTTGCCAGGCGGCATGCAACAGATGTCTCCGTTAGCTTTAGTAACACATGCGGCTAACAATCAACAAGCACAGGCAGCAGTAGCTGCTGCAGCTGCCCACCACAGACTGATGGCTCCCTCGTTTGGTCAAGTACCGAATTTGGTAACACAGGAAATTGAGCAGCGTATGATCGAGTATTTGAAACTAATTCAAGTTAAGAAGGAACAAAATGCCATGAGCAATGGTGCAGGCCCCATGGGTCTTTCGCCGCACCACCAGCATCATCAACAGCAACAACAACAGCAACAGCAGCAACAACAACACCAGCAGCAGCGCCAGAGATCTCAAAGTCCCGAGATAAATACAAGAGAAGCCTTGAATGCATTGGAAATGTCACGTGTTGCATTGTGGCAAATGTACCATAATAACACCAGCCCACCAGCTTCTGTAAACACCTCACCACAAGGTGGTGGCAATGTTAATAGTGGTGGAAGTCAAGATGTTGGTAGCGAAGCACAACGTAGCGAGGCTTTAAACCTATCGGATTCACCACCAAATATCACCTCAATAAAACGTGAGCGTGAGCGCGAACCCAGCCCGGAAATAAATGAACACAATGATTTTCACCACCAACCCCCTCCAGCTAAACGTGCCGGATTTCCTGCCAGTTTCTATTTACCACCCGGCATGAGTGACATGGCTGCTGCTGCCGCAGCGGCCAACTTTCACTACAAAGGTGGCCAGCACGATTCCGATGCTGAGGCAGACGAAGAAAACGACGACGACGGATGCGAGCACAATACAACAGCAAATTCCTCGCACGATGACCCCAACGAACGCCAGCAATTAAATGGTAGTTCGCTGCGAGCACCTCGACATCATGGAAGTAACAGCAGTGTTCACAATGACAAGTCTGACGATTCGGCCATTGAAAATTCCCCTTCCACCTCAGCGGCATCAGCCGGTAATGGTCACACTTCACCGATATCAACTAAGAAAATTCATTTGTCAAAGCAGACTCAACAGCAACACAACACAGCAACGGTCAACACTAACAACGCTGACAATATGACGACGGGTAACTCTACCTCGCTGGATCCATTCGAGGCATTGAACTTGCTCTCTGGAATGCAATTTCGTCTAACACGAAAAGGTACTAATTCCGACGGCGAACAAGAGTTAGTGGTTAACCTTGAACTAAACGGCATTAAATACTCTGGTTTACTTATTTCAAACACCTCAAAACTGGCAACATCAATAGCGACGGCATCAAACGAAACCACGACGTCGACGGCAACGATGTCGTCTATCAGCAACAACAAAAATGTAAACAATTCCAACAAAAGCGATAACAACATTGCAACCATTAGCCGTAAGAACGGCACTCACAGTCACACTCCCACCAACATCATTAACAATACCAATGAATCAAGCAAGGATTTAGTCGTTGCCATGGATGCAGTGGAAGATACAAGTGCAGTTACAATGCGTGATACTGAAACACCTCCAAACACATCCATGACAGCAACACCACCAGCAATAGCAACGAATCAAACAAATGCTGTCATAGCAAATGGTCCCAACAGTAGCACTAACCCACTCAAGGATGCCCTAATAACATCATAG
- Protein Sequence
- MQLNTMDCTGRSNLNERDSELGDDMSHDDHSDDEMRDCDSVEGDHISRVGSRLNTSMTSNGAGTVGDMSGPDHPNDMAMSHHHQFPSNHPLNALGSFMGIGSLHGIPNLQHNDVLEKLKMQVRDMKVGLMDQEYAAAHAAAFGSNVLPTPINTAFTIPPTTMASFTHAAQTLAAQAGNNINSHLNVNSSSSSLGGQSVPNGSHNSFSFTSPTAPSSKDVNPASNSSTSSETSNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMQMPQMARQSLPGGMQQMSPLALVTHAANNQQAQAAVAAAAAHHRLMAPSFGQVPNLVTQEIEQRMIEYLKLIQVKKEQNAMSNGAGPMGLSPHHQHHQQQQQQQQQQQQHQQQRQRSQSPEINTREALNALEMSRVALWQMYHNNTSPPASVNTSPQGGGNVNSGGSQDVGSEAQRSEALNLSDSPPNITSIKREREREPSPEINEHNDFHHQPPPAKRAGFPASFYLPPGMSDMAAAAAAANFHYKGGQHDSDAEADEENDDDGCEHNTTANSSHDDPNERQQLNGSSLRAPRHHGSNSSVHNDKSDDSAIENSPSTSAASAGNGHTSPISTKKIHLSKQTQQQHNTATVNTNNADNMTTGNSTSLDPFEALNLLSGMQFRLTRKGTNSDGEQELVVNLELNGIKYSGLLISNTSKLATSIATASNETTTSTATMSSISNNKNVNNSNKSDNNIATISRKNGTHSHTPTNIINNTNESSKDLVVAMDAVEDTSAVTMRDTETPPNTSMTATPPAIATNQTNAVIANGPNSSTNPLKDALITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00258649; iTF_00331326; iTF_00921884; iTF_00921229;
- 90% Identity
- iTF_00258649;
- 80% Identity
- -