Basic Information

Insect: Calliphora vicina
Gene Symbol: retn
Assembly: GCA_958450345.1
Location: OY288236.1:53059194-53117118[-]

Transcription Factor Domain

TF Family: ARID
Domain: ARID domain
PFAM: PF01388
TF Group: Helix-turn-helix
Description: This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 2.7e-26 1.6e-22 80.6 0.0 2 89 227 312 226 312 0.96

2 2 1.9 1.1e+04 -2.2 0.3 7 29 454 476 447 494 0.62

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	2.7e-26	1.6e-22	80.6	0.0	2	89	227	312	226	312	0.96
2	2	1.9	1.1e+04	-2.2	0.3	7	29	454	476	447	494	0.62

Sequence Information

Coding Sequence: ATGCGTGACTGTGATTCAGTAGAAGGGGATCACATCTCTAGAGTAGGATCGCGCTTAAACACATCCATGACAAGTAACGGAGCGGGAACTGTCGGTGATATGAGTGGTCCTGATCATCCCAATGATATGGCCATGAGTCATCATCATCAATTTCCTTCAAACCACCCACTGAATGCCTTGGGTAGTTTCATGGGAATCGGTAGTTTGCACGGTATTCCAAATTTACAGCACAATGATGTGTTGGAGAAACTTAAAATGCAAGTACGTGATATGAAAGTGGGCCTAATGgaTCAAGAATATGCTGCGGCGCATGCAGCTGCTTTTGGATCAAATGTGTTGCCAACACCAATAAATACAGCATTCACAATACCACCCACAACAATGGCATCATTCACACATGCCGCACAGACTCTGGCTGCTCAAGCCGGTAACAATATAAATTCACATTTGAATGTAAATTCTTCGTCTTCAGTGGGAGGACCATCGGTACCCAATGGCAGTCATAATAGCTTTTCATTTACTTCCCCAACGGCACCCAGTTCAAAAGATGtaAATCCTGCCTCGAATTCATCAACATCAAGCGAAACATCAAATTCTTCACAACAGAACAATGGCTGGAGCTTTGAAGAGCAATATAAACAAGTTCGACagTTGTACGAGATCAATGATGATCCGAAGCGTAAAGAGTTCCTTGATGATCTGTTTTCATTTATGCAAAAAAGaggCACACCCATCAATCGTTTACCAATAATGGCAAAATCAGTGTTGGATCTTTATGAACTGTATAATTTAGTGATTGCTCGAGGAGGTCTCGTCGATGTTATTAACAAAAAGCTGTGGCAGGAAATCATAAAGGGACTTCATCTGCCATCGAGTATAACAAGTGCAGCGTTCACACTACGTACACAatatatgaaatatttgtatccaTATGAATGCGAGAAGAAGAATCTAAGTACGCCAGCAGAATTACAGGCTGCAATTGATGGCAACCGTCGGGAAGGACGTCGTTCCAGTTATGGTCAATATGAGGCAATGCACAATCAAATGCAAATGCCTCAAATGGCTCGCCAATCTTTGCCAGGCGGCATGCAACAGATGTCTCCGTTAGCTTTGGTAACACATGCGGCTAACAACCAACAAGCACAGGCAGCAGTAGCTGCTGCAGCTGCACACCACAGACTGATGGCTCCCTCGTTTGGTCAAGTTCCGAATTTGGTAACACAGGAAATTGAGCAGCGTATGATCGAGTATTTGAAGCTAATTCAAGTTAAGAAGGAACAAAATGCTATGAGCAATGGTGCGGGACCTATGGGTCTTTCGCCGCACCACCAGcatcatcagcagcaacaacaacagcaacagcagcaacaacaacaccaacagcAGCAGCGTCAGAGATCTCAAAGTCCCGAGATAAATACAAGAGAAGCCTTGAATGCGTTGGAAATGTCACGTGTGGCATTGTGGCAAATGTACCATAACAACACCAGCCCACCAGCTTCTGTCAACACTTCACCACAAGGTGGTGGCAACGTAAATAGTGGTGGAAGTAATGATGTTGTTAGCGAAGCACAACGTAGCGAGGCTTTAAACCTCTCGGATTCACCACCAAATCTGACCTCAATAAAGCGTGAGCGTGAGCGCGAACCCAGCCCGGAAATGAATGAACAGAATGATTTTCACCACCAACCTCCTCCTGCTAAACGTGCCGGATTTCCTGCCAGTTTCTATTTACCACCCGGCATGAGTGACATGGCGGCTGCTGCCGCAGCGGCCAACTTTCACTATAAAGGTGGCCAGCACGATTCCGATGCTGAGGCTGACGAAGAAAACGACGATGACGGATGCGACCATAATACAACAGCAAATTCGTCGCACGATGACCCCAACGAACGCCAGCATTTAAATGGCAGTTCGCTGCGAGCACCTCGACATCATGGCAGTAACAGCAGTGTTCACAATGACAAGTCTGACGATTCGGCCATTGAAAATTCCCCTTCCACCTCAGCGGCATCGGCCGGTAATGGTCACATTTCACCCATATCTACTAAGAAAATTCACTTGTCAAAGCAGACTCAACAGCAACACAACACAGCAACGGTCAACACTAACACTAACACCGCTGACAATATGACGACGGGTAACTCTACCTCGCTGGATCCATTCGAGGCATTGAACTTGCTCTCTGGAATGCAATTTCGTCTAACACGAAAAGGTACTAATTCCGACGGCGAACAAGAGTTAGTGGTTAACCTTGAACTAAACGGCATTAAATACTCTGGTATACTTATTTCAAACACCTCAAAACTGGCAACATCAATAGCGGCGACATCAACCGAAACAACGACGTCGACGACAACGATGTCGTCaatcagcaacaacaaaaatgtcaacaatTCCAATAAAAGCGATAACAATATTGTAAACATTAGCCGTAAGAACGGCACTCACAGCCACACTCCCACCAACATCATTAACAATACCAATGAATCAGGCAAGGATTTAGTCGTTGCCATGGATGCAGTGGAAGACACAAGTGCATTGACAATGCGTGATACTGAAACACCACCAAACACATCCATGACAGCAACACCACCAGCAATAGCAACGAATCAAACAAATGCTGTCATAGCAAATGGTCCCAACAGTAGCACTAACCCACTCAAGGATGCCCTAATAACATCATAG
Protein Sequence: MRDCDSVEGDHISRVGSRLNTSMTSNGAGTVGDMSGPDHPNDMAMSHHHQFPSNHPLNALGSFMGIGSLHGIPNLQHNDVLEKLKMQVRDMKVGLMDQEYAAAHAAAFGSNVLPTPINTAFTIPPTTMASFTHAAQTLAAQAGNNINSHLNVNSSSSVGGPSVPNGSHNSFSFTSPTAPSSKDVNPASNSSTSSETSNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMQMPQMARQSLPGGMQQMSPLALVTHAANNQQAQAAVAAAAAHHRLMAPSFGQVPNLVTQEIEQRMIEYLKLIQVKKEQNAMSNGAGPMGLSPHHQHHQQQQQQQQQQQQHQQQQRQRSQSPEINTREALNALEMSRVALWQMYHNNTSPPASVNTSPQGGGNVNSGGSNDVVSEAQRSEALNLSDSPPNLTSIKREREREPSPEMNEQNDFHHQPPPAKRAGFPASFYLPPGMSDMAAAAAAANFHYKGGQHDSDAEADEENDDDGCDHNTTANSSHDDPNERQHLNGSSLRAPRHHGSNSSVHNDKSDDSAIENSPSTSAASAGNGHISPISTKKIHLSKQTQQQHNTATVNTNTNTADNMTTGNSTSLDPFEALNLLSGMQFRLTRKGTNSDGEQELVVNLELNGIKYSGILISNTSKLATSIAATSTETTTSTTTMSSISNNKNVNNSNKSDNNIVNISRKNGTHSHTPTNIINNTNESGKDLVVAMDAVEDTSALTMRDTETPPNTSMTATPPAIATNQTNAVIANGPNSSTNPLKDALITS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00045157;
90% Identity: iTF_00045157;
80% Identity: -