Lcup006241.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- retn
- Assembly
- GCA_001187945.1
- Location
- JRES01000729.1:773052-830130[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-26 6.8e-23 80.6 0.0 2 89 262 347 261 347 0.96 2 2 5.1 1e+04 -3.4 0.1 8 38 486 520 479 521 0.54
Sequence Information
- Coding Sequence
- ATGCAACTAAATACCATGGACTGCACCGGGCGTTCAAATTTAAATGAACGTGATTCGGAGCTAGGAGATGATATGtcACATGATGATCATTCCGATGATGAAATGCGTGACTGTGATTCAGTTGAAGGGGATCACATCTCTAGAGTAGGATCGCGCTTAAACTCATCTATGACAAGTAACGGAGCGGGAACGGCTGGTGATATGAGCGGTCCTGAACACCCCAATGATATGGCCATGAgCCATCATCATCAATTTCCATCAAACCACCCTTTAAATGCCTTGGGTAGTTTTATGGGCATCGGTAGTTTACACGGTATTCCAAATTTGCAGCACAATGATGTGTTGGAGAAACTTAAAATGCAAGTTCGTGATATGAAAGTAGGCTTGATGgaTCAAGAATATGCTGCCGCTCATGCAGCTGCATTTGGATCTAATGTGTTGTCATCACCAATAAATACAGCTTTCACATTACCACCCACAACAATGGCATCGTTTACACATGCCGCACAGACTCTGGCTGCTCAAGCCGGTAACAATATAAATTCACATTTGAATGCAAATTCTTCATCGTCTTCAGTCGGTGGACCTTCGGTGCCCAATGGCAGTCataatagtttttcatttaCCTCCCCAACGGCACCCAGCACAAAAGATGtaaatCCTGCCTCGAATTCATCAACATCCAGTGAAACATCAAATTCTTCACAACAAAATAATGGCTGGAGTTTTGAGGAGCAATATAAACAAGTTCGACAGcTATACGAGATCAATGATGATCCCAAACGTAAAGAGTTCCTTGATGATCTATTTTCATTTATGCAAAAGAGAGgcACACCCATTAATCGTTTACCAATAATGGCTAAATCAGTATTGGATCTTTATGAACTGTATAATTTAGTGATTGCCCGAGGAGGTCTTGTcgatgttattaacaaaaagctATGGCAGGAAATTATAAAAGGACTTCATCTGCCATCTAGTATAACAAGTGCAGCGTTTACACTACGAACACAatatatgaaatatttgtatccCTATGAATGCGAGAAGAAGAATTTAAGTACCCCAGCGGAACTACAAGCTGCTATTGATGGAAACCGTCGGGAAGGTCGTCGTTCCAGTTATGGTCAATACGAAGCAATGCACAATCAAATGCAAATGCCTCAAATGGCGCGCCAATCGTTGCCAGGCGGCATGCAACAGATGTCCCCATTAGCTTTGGTAACACATGCGGCTAACAATCAACAGGCTCAggctgcagcagcagctgcGGCTGCACACCACAGACTGATGGCACCCTCGTTTGGTCAAGTGCCGAATTTGGTAACACAGGAAATTGAGCAGCGTATGATcgaatatttaaagttaattcaAGTGAAAAAGGAACAAAATGCCATGAGCAACGGTTCGGGTGCTATGGGTCTTTCGCCTCACCATCAGCATCAACAGCAGtcacaattacaacaacaacagcagcgtCAGAGATCCCAAAGTCCTGAGGGCAACCCAGGCATGAATGCGTTGGAAATGTCACGTGTGGCATTATGGCAAATGTACCAAAACAATACATCTCCACCAGCTTCTGTGAATACCTCACCACAAGGTGGCGCGGGTAGCGTAAATACAAATAATGGCGGCAGTCATGATGTTCAACGTAGCGAAGCCATAAACCTGTCGGATTCACCACCAAATCTCACCTCAATAAAACGTGAGCGAGAACGCGAACCTAGCCCGGAAATGAGTGAACATAATGATTTTCACCACCAACCTCCTCCAGCAAAACGTGCCGGATTTCCTGCCAGTTTCTATTTACCACCAGGCATGAGTGGCATGGCTGCTGCCGCCGCTGCTGCCAACTTCCATTACAAAGGTGGCCAGCACGATTCTGATGCTGAGGCTGATGAAGaaaacgatgatgatgatgaaggcGACCATAATACAACTGCAAATTCCTCGCACGATGACCCAAATGAACGCCAGCATTTAAATGGCAGTTCACTCCGAGCACCACGACACCATGGCAGCAATAGCAGTGTTCACAATGATAAGTCTGACGATTCAGCCATTGAAAATTCTCCCTCCACCTCAGCGGCATCGGCTGGCAATGGCCAAATTTCTCCGGTATCCACTAAGAAGATTCACTTGTCAAAACagacacaacaacaacaccatgCTGCAACGGCGAACAACAACACTGGTAGCACACTTGCTGATAATATGACGACTGGTAAATCTACCTCGCTGGGTCCATTCGAGGCGTTGAACTTACTATCTGGAATGCAATTTCGTGTAACACGAAACGGTACCAATTCTAATGGCGAACAAGAGTTAATGGTTAACCTTGAATTAAACGGTATAAAATACTCTGGTGTACTTGTTGCAAACACATCAAATCAAAAAATGATATCAACTGAAACAACGACGTCGACATCCACATTGTCGGTAATCGGTGACAACAGCTTcagtaataacaaaaatgtcaaCAATTCTAACAAAAGCGAAAAAAACATCACAAACACAAATCGCAAGAACGGCAGTCACTGCCACAGTCCCAAGGAAGACAAGGATTTAGTCGTTGCCATGGATGCAATGGATGATACAAGTGCATTGACAATGCGTGATACAGAAACACCACCAAACACATCCATGACAACCACAAAAACAACACCATCAACAAATCAAACAAATGCTGTCATAGCAAATGGTCCCAACCCTAGTAGTAGCAGTAGCAATAGTAACTCTAATACACTCAAGGATGCCCTAATAACATCATag
- Protein Sequence
- MQLNTMDCTGRSNLNERDSELGDDMSHDDHSDDEMRDCDSVEGDHISRVGSRLNSSMTSNGAGTAGDMSGPEHPNDMAMSHHHQFPSNHPLNALGSFMGIGSLHGIPNLQHNDVLEKLKMQVRDMKVGLMDQEYAAAHAAAFGSNVLSSPINTAFTLPPTTMASFTHAAQTLAAQAGNNINSHLNANSSSSSVGGPSVPNGSHNSFSFTSPTAPSTKDVNPASNSSTSSETSNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMQMPQMARQSLPGGMQQMSPLALVTHAANNQQAQAAAAAAAAHHRLMAPSFGQVPNLVTQEIEQRMIEYLKLIQVKKEQNAMSNGSGAMGLSPHHQHQQQSQLQQQQQRQRSQSPEGNPGMNALEMSRVALWQMYQNNTSPPASVNTSPQGGAGSVNTNNGGSHDVQRSEAINLSDSPPNLTSIKREREREPSPEMSEHNDFHHQPPPAKRAGFPASFYLPPGMSGMAAAAAAANFHYKGGQHDSDAEADEENDDDDEGDHNTTANSSHDDPNERQHLNGSSLRAPRHHGSNSSVHNDKSDDSAIENSPSTSAASAGNGQISPVSTKKIHLSKQTQQQHHAATANNNTGSTLADNMTTGKSTSLGPFEALNLLSGMQFRVTRNGTNSNGEQELMVNLELNGIKYSGVLVANTSNQKMISTETTTSTSTLSVIGDNSFSNNKNVNNSNKSEKNITNTNRKNGSHCHSPKEDKDLVVAMDAMDDTSALTMRDTETPPNTSMTTTKTTPSTNQTNAVIANGPNPSSSSSNSNSNTLKDALITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00045157;
- 90% Identity
- iTF_00921884;
- 80% Identity
- -