Arep006310.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949125135.1
- Location
- OX421226.1:13319215-13323658[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.7e-72 1.6e-67 228.6 25.2 1 297 41 324 41 327 0.88 2 2 0.26 7.6e+03 -3.5 9.8 123 170 342 389 333 400 0.51
Sequence Information
- Coding Sequence
- ATGAGTCGCTCGCGCCTCGCGCCCACATGGCACCGCATCTCGCGGCGGCTTGCGAAACACTTGCAGCGGCTCACAGTGAACATTTGGCAACCTCTGTTGCTATTAACTATTAACCATTTGGCGGAGCAGcggctggcggcgcggcgcgcggcgcgggccgaGGCGCGCGAGATACGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCGTATGACATGTATGCAGAAACGGTGTCGCGGCGCGGCGGCACGCGGCTGGCCGTGCTCAGCCCGGCCGCCAGCCTGGTGCACTCGCCGCGCCGGAGCTCGGAGGACTCCGCCGACGACACCTTCAACATTAAGGACTTGCGGCACGAGCTGAAGGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGACGGCGCAGCTCGACAACGACAAGGCGGCGCAGCACTACCAGCTCGAGCTGCTCAAGGACCGCGCGCTCGAGCTGCGGGAGGACCTCGCGCAGCTGCAGCGCGAGCACCGCGAGAAGTGCTCCGCGCTGGAGCGGCTGCGGCGCGAGCACGTGTCGACGGAGCGCGagctggcggcggcgcgggaCGCGGTGCGCGCGCgggacgcggcggcggcgcacgcCGGGTTCGCGTTCGCGGAGGCGGCGCCCGGCGCCGACCACGCCGAGGGGTTCGGCGCCGTGCCGCCGCTGGCGCTGCTGTCGCACCTGTCCGAGCAGGCGCTCGCCGACCAGGGGGAGGGCACGCTGGACGTGCGGTTGCAGAAGCTGGTTAGCGCGAAGGCGGCGCTGGAGTCGGAGGTTCGCAAACTGAAGCTGACGCTCAACGAGGAGCGAGCGGCGCGCCAGAACGGAGTCTCCAACCAGCACGACGCGGACTACGAAAACGAATTGGAAAGTCTCCGCAAGTCGGTGTCGGAGGCGAAGGgtcgcgcggcgcgcgcggagGCCGAGGCGGCGCTGCAGGCGGCCGGCGTGGCGCGGCTCGAGGCGCAGCTGCAGCGCCTGCGCGCGCGCCAGGACGCCACCGACGAGCGCGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGCGAGGCGCGGGAAGCTCTCAACCGGGTGGAGGAGCTGGAGACGGAGAACAACCATCTGACCAAGCGGCTCGACAAACTGAAGAACGCCAAGTCGGCGCTGCTGAAGGACCTGTGA
- Protein Sequence
- MSRSRLAPTWHRISRRLAKHLQRLTVNIWQPLLLLTINHLAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVSRRGGTRLAVLSPAASLVHSPRRSSEDSADDTFNIKDLRHELKEVEEKFRKAMILTAQLDNDKAAQHYQLELLKDRALELREDLAQLQREHREKCSALERLRREHVSTERELAAARDAVRARDAAAAHAGFAFAEAAPGADHAEGFGAVPPLALLSHLSEQALADQGEGTLDVRLQKLVSAKAALESEVRKLKLTLNEERAARQNGVSNQHDADYENELESLRKSVSEAKGRAARAEAEAALQAAGVARLEAQLQRLRARQDATDEREEQLKQERRKLQREAREALNRVEELETENNHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00055438;
- 90% Identity
- iTF_00826985;
- 80% Identity
- -