Aaln007440.1
Basic Information
- Insect
- Agelastica alni
- Gene Symbol
- Rreb1
- Assembly
- GCA_950111635.2
- Location
- OX467708.1:85655788-85660711[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.9e-05 0.0072 18.4 2.2 1 23 56 78 56 78 0.98 2 15 0.00012 0.029 16.5 0.3 1 23 91 113 91 113 0.98 3 15 8.2e-05 0.02 17.0 4.5 1 23 119 141 119 141 0.99 4 15 0.00015 0.036 16.2 0.7 2 23 229 251 228 251 0.91 5 15 0.36 89 5.5 3.0 1 19 297 315 297 317 0.92 6 15 0.0027 0.66 12.2 0.1 1 23 442 464 442 464 0.98 7 15 4.6e-06 0.0011 20.9 0.8 1 23 473 495 473 495 0.99 8 15 0.00018 0.044 15.9 2.8 1 23 501 524 501 524 0.97 9 15 0.00038 0.094 14.8 3.0 1 23 884 907 884 907 0.97 10 15 9e-05 0.022 16.8 0.4 2 23 1105 1126 1104 1126 0.97 11 15 0.098 24 7.3 6.3 1 23 1132 1155 1132 1155 0.97 12 15 0.0025 0.62 12.3 2.5 1 23 1182 1206 1182 1206 0.96 13 15 0.086 21 7.5 0.9 1 23 1255 1278 1255 1278 0.96 14 15 0.013 3.2 10.0 0.4 3 23 1325 1345 1323 1345 0.93 15 15 0.0028 0.69 12.1 6.0 1 23 1351 1373 1351 1373 0.98
Sequence Information
- Coding Sequence
- ATGGAATCACTCCCATCGCCCAACGAAACTACCAAAGAGACGGCAAACAGAAGTGACTCCGGAATATTCTCGTCAACGACGAACACGAGCGTAGACCCAACGGACCATTCGAAAACTTGCGACAGCGGAGATAATCGCAGCGACTGCTCCTCTCCAGAAAGACAGTATTTCTGCCCTATATGCGAAAAAATGTTGACCTCGCAACATAATTTTACGTTACACATTCGATCTCATAACAACGACAACTCCGACCAGGACGCGGAAAGGGGTTACACTTGTAGAATATGTTCCAAGGTTCTCAGTTCCAACAGCAGCCTCGATAGACACGTCCTCGTCCATAGTGGAGAGCGGCCCTTTCGTTGTAGATTCTGCGGAGACACTTTTACTACGAACGGTAATATGCACAGACACATGAGGACTCACTCGCAAAGGAACGAGAGCAGCTACGAGTCGGACGGCAGTGTTGACAGCGCCAGTTCAAAAAGTACTGAATTTAATAACAACAAAGTTGAGAAAAACAAACGAAAATTAGAGACCATCGATGTGAGCGataaaaaacctaaaatacAACTCAACTCGGATGGTTCTGACACGTTCCGATGCCCAGTATGTGAACGAAATGATTTCAATTCGGCTCTTATCCTCGAAGCTCATTTAGAAGACAACCATCCCGATTATCCCACCAGATGTCATATATGTAACGAAACGTTTGTGAATAGCAAGCTTCTAAATGCACACAAGATTGCTGTTCACGAAAATGTAGCTAATAAACAGCCCGTCATCGGTTTTAAAGATCTGACTTTCGTGGATTTTTCCAGCGAAAAGTTTCCTCACATCGCTAGACGGGAATGCGAAATGAATCTACACAAAGTTTCGAGTGGATTAAAGTTTCAATGCAAGCATTGCAGCAGAGCTTTTCCTTGTTCGAACTCTCTGAATATCCACGAATTTAACTGTGTATCACCATTATCCCTCAATAGCGCGAACGTAAACGTTCCACAACCGGACATAAGAAGAATGGAATTCTTCAATAGATTAAATTTAGTTGACAACTCTTCTGATAAGCAAACAGTAACGGCTTTTACCTTCAACAAATTAAAAGAGCACTTGGATAGAGGAGTCGATAACACCAAAGATTTAGCTGATATTCAGTCAATTTTGTCtaatataaatttgaaaaaactgcAAACGAGCCAATCGGACTTGCAACCGCAAACTCCTAAAGAATTTTTGGAAAATTCCAATGATTTTTCCAAGATCGATGAAGAAGAATCTCAAGATATTTTCGCAGTCGAATTTAGAAAAATGAAACTAAGAGGAGAGTTCCCTTGCAGACTGTGCCCTGAAGTGTTTCCTAATCTGAGAGCGTTAAAAGGCCATAACAGAAAACATTTGGTTGGTAATAACAATGGAACTTACTATTGCAACATGTGTCCATACTCTTCCATCGATAAAAACGCACTTACTCGTCATATGCGCACACATAACGGCGACAGACCATACGAATGTTCTATTTGCAACTACGCCTTTACTACCAAAGCAAATTGTGAACGCCACTTACGAAACAGACATCTCAAGTCGACTAGAGAAGAAGTTAAAAGGTCGATAATTTATCATCCTTCTGAAGATCCAACGaacgaagaattgaacaagctcATTACGAAGGATGATACCAAGAAAATAAATACGCCTACCGATGAAAAGATGTCCTTTTCTTCCAAATTTTCGGAAATGATTCGTACtcctaataaattaaaaccgGAAATTTCACCAGTATACCCAGATTTGCAGAATTTAAAGCCGACAAAACCTTTTGCGAACATTAACGACATGAACATAATGCGATCTGATGCATCTTTAAAACAACCTTTTGTACCAACTTACTCTCCGAATTTTACTAACAAAATTCAAGTTAAAGATTTAACCACTTTAAAAACCACCAATTATGATAACGAATCTGATGATGATTAcattgaagaagaagatgaacAACCGCTAGATCTGGTTCTAGATTTGAGTAAGAAAAAAACTCCAGAAATATCTGTGTATTTAGATGAAGATGAACCTCAAGATTTGACTAAAAAAGCATCGCCTCCAATACAGCAGCAATTGCCTCCGAATATGGGACAACTTTTCGCCCAGCAGTTACTTAAAACGCCTCCAAAGATAGATCCGGCTGCTTTGTATGCACTCTACAGAAATAATTTTCCAATTCCCACTTGGCCAGGATTACCGATAAACCCATTATTTTTTTCCGTGGTTCCTCCTGTCCTACCCCAAAATAATCAGGAGCTTAAAGAGCGCATGCAGAGGTATCAACTCTGCGGAGGTTCAATGATATCTGATGAAATGAAAAATCTTCAATTGCAGCAACCGTTCTATGGTCCCCCACCTTATCCTAATGGGTTCAGATTAGAACCTAAATCCGAAGTTGCTCTCGAAAATAACTTTTCAACCCCCAAGAAGCCCGAAGAACCTTTAAGTCTGAACATAGACCCTAATTTTCACGATAATTTGACCAAACTACAAAGTCCCATACCTTCCAACAAACCTGACTTAATGCATTCCCCTAATACAGTCAAGATGGTAATAAAAAATGGCGTTTTAATGCCTAAGCAAAAACAAAGAAGATACAGAACAGAAAGGCCTTTTACATGCGAACACTGCTCTGCACGATTTACTCTAAGATCAAATATGGAAAGACATATTAAACAACAGCATCCTCAGTATTGGTCTCAGAGGCAGAGAAGTGCAGTTGGTAATCCAGGCAAAAAACCTCAAATTGgagttaaaacaaattattgcgATATTAGCATACCGAATCCCAATTATGACTTTATCAAATACCAAAAATTCGATGATACCAAAGAAATCCTCAACGATAAATTCAAGTTTTCGCTATTATCACAACAACTAAATAGAACggaatataaaaaagaagacgATGAAGATTGCGCTCTTGTAATCGATGAAAATGAAGAAAAGCCAGAACTTAAAACTAATGAGAATGGTCATGATGAAGAAGACGACAAATCAGATCACAAATCTACCAAAATCGAAGAAAGTCCCGATCTTGTACCTGTGTCCAGATTACTTGATAACGCTTCTCAGCAGCAGTTCAAAGAGTATTTCAAAAGAGATGGAGACGAACATGAAGTAGGATTAGCTAGCGAAGAAGACGAAGAGGGTCTTGTTGCTAGTGGTAGTACCAGCGAAGGCAACATTTCTGGCACCGATGaaaataaatcAGAATCAGATGTAGTTCAGCCGATAAAGAAAAAATCTGCTTACTCGTTGGCACCGAATCGCGTAAGTTGTCCATACTGCAGCAGAAAGTTTCCTTGGAGTTCCTCTCTACGTCGTCATATTTTAACCCATACAGGTCAAAAGCCATTCAAATGCAGTCACTGCCCGTTGCTATTCACGACCAAATCAAATTGCGACCGCCATCTATTAAGAAAACACGGCAATGCCGCTACCACTATTCCAAACGACAGTTCGAATAACACGAATTATCTCATGAGAAACGTACCCGAAAGGCCTTTTAAGTGCTCGAATTGCCCGAGTAGCACATTTTCGACTTATTCTAACCTAAAAAAGCATATCAGTTCGAAGCATTCGACTAACGCTCAAGGAGATGATATTAAAGCGCAAGGTTATGAAGCTGGAAGCTCAGAAGATGAGAAGTTTCCAAAAAGCGATTGGGAAAAGCCACCTGCATACAAACTTCCCGATTCCGTGATACAAAATTCAGACCTTCCATATAAATGTCACTTGTGTGAGGGTTCCTTCTCTGAACGTCAGGATGCTTTAGATCACATTCAAAACAGACACTCTTCAGAATATGAATTACTTATGTCGAAAAACGCACTCGAATCTAATCCTCCACCTCAAGAAGAACAGGCTAATCATGACGACGAAGATGTGGAAATACGTGGCAAATTTCCAGACTATTCCAATCGCAAAGTCATTTGCGCGTTTTGCATGCGTCGATTTTGGTCAGCGGAAGACTTGAGACGACACATGCGCACGCATACGGGGGAACGACCATTCAGTTGCGACATCTGCAAGCGCAGGTTCACACTAAAGCACAGCATGCTGCGACATAGAAAGAAACACAATGTAAATTTTGAACACGACGCTAATATAAGCGACGAAGACATAAACAACGGTTCTTCTCCTTCTTACACGAAGACCGAGGGGAATTTTACTCAAAAAACGGACGAGTCCGATGGAGCCGAAGGAGTGGATTTGATCAGCAATCTTTTAGGATTAAGGGGATCAATAATCGATAAAGTTTTGGCAGCCTCTGCGGACGATGCGGCCAAACTGTTGGGAGTGAAAAATGGCGCTAAagagtaa
- Protein Sequence
- MESLPSPNETTKETANRSDSGIFSSTTNTSVDPTDHSKTCDSGDNRSDCSSPERQYFCPICEKMLTSQHNFTLHIRSHNNDNSDQDAERGYTCRICSKVLSSNSSLDRHVLVHSGERPFRCRFCGDTFTTNGNMHRHMRTHSQRNESSYESDGSVDSASSKSTEFNNNKVEKNKRKLETIDVSDKKPKIQLNSDGSDTFRCPVCERNDFNSALILEAHLEDNHPDYPTRCHICNETFVNSKLLNAHKIAVHENVANKQPVIGFKDLTFVDFSSEKFPHIARRECEMNLHKVSSGLKFQCKHCSRAFPCSNSLNIHEFNCVSPLSLNSANVNVPQPDIRRMEFFNRLNLVDNSSDKQTVTAFTFNKLKEHLDRGVDNTKDLADIQSILSNINLKKLQTSQSDLQPQTPKEFLENSNDFSKIDEEESQDIFAVEFRKMKLRGEFPCRLCPEVFPNLRALKGHNRKHLVGNNNGTYYCNMCPYSSIDKNALTRHMRTHNGDRPYECSICNYAFTTKANCERHLRNRHLKSTREEVKRSIIYHPSEDPTNEELNKLITKDDTKKINTPTDEKMSFSSKFSEMIRTPNKLKPEISPVYPDLQNLKPTKPFANINDMNIMRSDASLKQPFVPTYSPNFTNKIQVKDLTTLKTTNYDNESDDDYIEEEDEQPLDLVLDLSKKKTPEISVYLDEDEPQDLTKKASPPIQQQLPPNMGQLFAQQLLKTPPKIDPAALYALYRNNFPIPTWPGLPINPLFFSVVPPVLPQNNQELKERMQRYQLCGGSMISDEMKNLQLQQPFYGPPPYPNGFRLEPKSEVALENNFSTPKKPEEPLSLNIDPNFHDNLTKLQSPIPSNKPDLMHSPNTVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQYWSQRQRSAVGNPGKKPQIGVKTNYCDISIPNPNYDFIKYQKFDDTKEILNDKFKFSLLSQQLNRTEYKKEDDEDCALVIDENEEKPELKTNENGHDEEDDKSDHKSTKIEESPDLVPVSRLLDNASQQQFKEYFKRDGDEHEVGLASEEDEEGLVASGSTSEGNISGTDENKSESDVVQPIKKKSAYSLAPNRVSCPYCSRKFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNAATTIPNDSSNNTNYLMRNVPERPFKCSNCPSSTFSTYSNLKKHISSKHSTNAQGDDIKAQGYEAGSSEDEKFPKSDWEKPPAYKLPDSVIQNSDLPYKCHLCEGSFSERQDALDHIQNRHSSEYELLMSKNALESNPPPQEEQANHDDEDVEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICKRRFTLKHSMLRHRKKHNVNFEHDANISDEDINNGSSPSYTKTEGNFTQKTDESDGAEGVDLISNLLGLRGSIIDKVLAASADDAAKLLGVKNGAKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01047699; iTF_00792436; iTF_00387484;
- 90% Identity
- -
- 80% Identity
- -