Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: Rreb1
Assembly: GCA_963243735.1
Location: OY725342.1:4243460-4251787[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00027 0.046 15.6 2.6 1 23 56 78 56 78 0.98

2 16 0.00021 0.035 16.0 0.3 1 23 91 113 91 113 0.98

3 16 6e-05 0.01 17.7 6.4 1 23 119 141 119 141 0.98

4 16 0.17 28 6.9 0.1 1 23 199 223 199 223 0.87

5 16 0.0008 0.14 14.2 0.3 2 23 229 251 228 251 0.91

6 16 0.31 53 6.0 1.0 1 19 297 315 297 318 0.88

7 16 0.072 12 8.0 0.1 1 23 444 466 444 466 0.96

8 16 4.9e-05 0.0083 18.0 1.9 1 23 475 497 475 497 0.98

9 16 0.0014 0.24 13.4 2.3 1 23 503 526 503 526 0.97

10 16 0.00049 0.084 14.8 3.0 1 23 895 918 895 918 0.97

11 16 0.00049 0.084 14.8 0.4 2 23 1116 1137 1115 1137 0.97

12 16 0.13 21 7.3 6.3 1 23 1143 1166 1143 1166 0.97

13 16 0.042 7.2 8.8 1.1 1 20 1193 1213 1193 1214 0.94

14 16 0.024 4.1 9.5 1.0 1 23 1265 1288 1265 1288 0.95

15 16 0.017 2.8 10.0 0.4 3 23 1335 1355 1333 1355 0.93

16 16 0.0036 0.61 12.1 6.0 1 23 1361 1383 1361 1383 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00027	0.046	15.6	2.6	1	23	56	78	56	78	0.98
2	16	0.00021	0.035	16.0	0.3	1	23	91	113	91	113	0.98
3	16	6e-05	0.01	17.7	6.4	1	23	119	141	119	141	0.98
4	16	0.17	28	6.9	0.1	1	23	199	223	199	223	0.87
5	16	0.0008	0.14	14.2	0.3	2	23	229	251	228	251	0.91
6	16	0.31	53	6.0	1.0	1	19	297	315	297	318	0.88
7	16	0.072	12	8.0	0.1	1	23	444	466	444	466	0.96
8	16	4.9e-05	0.0083	18.0	1.9	1	23	475	497	475	497	0.98
9	16	0.0014	0.24	13.4	2.3	1	23	503	526	503	526	0.97
10	16	0.00049	0.084	14.8	3.0	1	23	895	918	895	918	0.97
11	16	0.00049	0.084	14.8	0.4	2	23	1116	1137	1115	1137	0.97
12	16	0.13	21	7.3	6.3	1	23	1143	1166	1143	1166	0.97
13	16	0.042	7.2	8.8	1.1	1	20	1193	1213	1193	1214	0.94
14	16	0.024	4.1	9.5	1.0	1	23	1265	1288	1265	1288	0.95
15	16	0.017	2.8	10.0	0.4	3	23	1335	1355	1333	1355	0.93
16	16	0.0036	0.61	12.1	6.0	1	23	1361	1383	1361	1383	0.98

Sequence Information

Coding Sequence: ATGGAATCTCCACCTTCGCCAAACGAAATAACCAAAGAAACTGCAAACAGAAGTGACTCCGGAATCTTTTCCTGCACGACAAATACTACCATAGACCAAACTGATAGTTCAAAAACCTTTGATAGTGGCGACAACAGAAGTGATTGTTCTTCCCCAGAACGTAAATACTTCTGTCCGATTTGCGAGAAAATGCTGACCTCTCAACATAAGTTTACCCTTCACATAAGATCTCATAATAACGAAAATGAAGTGCAAGACTCCGAGAAGGGTTTTACTTGCAGAATATGTTCCAAGGTGTTAAGTTCCAATAGCAGCCTAGATCGTCACGTACTAGTCCATAGTGGAGAACGTCCGTTTCACTGCAAGTACTGTGGAGACACTTTTACAACCAATGGTAACATGCATAGACATATGAGGACCCATTCCCAAAAAAACGAAAGTAGCTATGAATCTGATGGTAGCGTAGATAGTGGTAGCTCTAAAAGCAcggaatttaataataataaagtagaaaaaaataagagaaaaatcgaaactATCGATACAAGCGATAAGAAACTGAAATTAGATTTAGATTCGAACATTCCGCAAACATTCCAATGTCCAGTATGTGAAAGATCAgattttaattcttctattaACCTAGAAGCTCACTTAGAAGATAACCATCCTGATTATCCAACCAAATGTCAAATTTGTAAAGAAACTTTTGCcaatagtaaattattaattgcgCATAAATCGGCCGTCCATGACATTGCGATAAATAAACAACCTGTTGTTGGTTTCAAAGATTTAACTTTCGTAGATTTTTCCAGCGAAAAATTTCCACACATTGCTAGAAGAGAATGCGAAATGAACTTACACAAAGCTTCTAGTGGATTAAAGTTCCAATGTAAACTATGTAACAGAGCTTTTCCATGTTCCAACTCTTTAAGTATTCACGAAAGTAATTGCAATTCTCTTGTATCTCTCAAACATTCCGATCCTAATATTATCTCTCAACCTGATATTAGACgaatggaattttttaatagattgaATCTAGTTGACAATTCCCCCGAAAAGCAGACATTAACAGCGTTTACTTCTAACAAATTAAGAGAGCATCTAGCTAGAGCAGTTGATAACACCAAAGATTTAGCTGATATTCAGTCTATTTTAtccaatataaatttacaaaagcTCCAAACAGACCAAAATGATCTTCAATCACAAAtttctaataaacaaaatttagacAATTCATTTGATTACCAAAAAACCGAGGAAGAAGAATCTCAAGATCTCTTCGCAgtggaatttagaaaaatgaagCTAAGAGGCGAATTTCCTTGCCGACTTTGTACTGCAGTGTTTCCAAATTTGCGAGCTTTAAAAGGTCACAACAGGGCACATTTAAATGGTAATAATAATGGAACGTATCATTGCAATATGTGCCCACATTCTTCCATAGATAAGGCTGCGTTGATTCGCCATATGCGCACACATAACGGAGATAGACCTTATGAATGTGCCCTTTGTAATTACGCTTTTACTACTAAAGCTAATTGCGAGAGACATCTCAGAAATAGACACGCTAAAACTACAAGagaagaagtcaaaaaatcaataatatatcaTCCTTCGGAAGATCCCACCAACGAAGAATTAAACAAACTCGTTTCTAAAGatgatactaaaaaaatatccacACCTACAGAAGATAAAATTCCTTTTGTTACACCAAAATTTTCAGAACTTATGCGCACTAgcagtaataaattaaaaccggAGATATATCCAGATTTACCGAATATTAAACCTCCAAAATCATTCTCGAATATTAATGAAATCATTAGAAATGATAATATGAGATCAATAAAAATTCCAGATGAAGTCCCGTATATTCCAGCTTTTACTCCAAATTTATCCAGTAAAATTCAAGTAAAAGACATGAACTCTTTGAAAGATAACTACGAAAATGACTCTGAAGAAGACTATATTGAGGAGgaagaagaagatgaagaaCAACCACTAGATTTGGTTCTAGATTTAAGCAAGAAAAGAGCACCTGAAAAACCGGAAAGTATTGCGGAAGAGGAGCCTCaagatttgacaaaaaaatcttcTCCCCCAGTACAGCAACACTTACCACCAAATATGAATCATATTTTTGCCCAACAGTTACTGAAGACGCCACCTAAGATTGATCCAGCTGCTTTATATGCTACACAACTTGCTTTATACAGAAGTGGATTTCCACTTCCAAGCTGGCCAGGATTTTCTCTAAATCCTTTACTTTTCTCCGTCCCACCAACTCTTCCACAAAATACTACTCAAGAACTCAAAGAAAGAATGCAGAGATTCCAATTATGCGGAGGATCAATGATATCAGACGAAGTCAAAAACCTTCAACGaccttttcaaatttccccaCCATATCCTAATGGTTTTAGAATTGAACCTAAACCCGAAATTTTATTAGAGAATAATTACTCTACTcctaaaaaaacagaagatttaAAGCCTTTAAGTCTAAATATCGATCCTAGTTTTCatgaaaatatcaataaattacaAAGTCCTATTCCTCCAAATAAATCTGACTTAATGCACTCTCCTAATGCCGTTAAaatggtaattaaaaatggagtATTGATGCctaaacaaaaacaaagaagATATCGAACAGAGCGACCATTTACTTGTGAACATTGTTCAGCTAGATTTACTTTAAGATCTAATATGGAAAGGCATATTAAGCAGCAACATCCTCAATATTGGTCTCAAAGACAAAGAAGTTCAGTCGGAACACCTGGAAAAAAACCTCAAATGAATATCAAATCAAACTACTGCGACCTAAGCATTCCTAGTCCCAATTATGACTTTTGCAAATACCAAAAATTCGAAGATACCAAAGAGTTAATCAACGAAAAGCTCAAATATTCTCTACTGTCTCAACAACTCAGTAGACCCGAGTATAAGAAAGAGGTAGAAGATGAGGATTTTGATTTAGTTATAGACGAACACGATGAGAAAACAGATCCAAAGACTGAAGAAAACGGACATGATGAAGAACGCAAATCTgataataaaactattaaagcTGAAGAGAGTCCGGACTTGGTGCCTGTGTCTAGGCTACTTGACAACGCTTCCCAACaacaatttaaagaattttttaaaagagatGGCGAAGAACATGAAGTTGGTTTGGCTAGTGAGGAAGATGAAGAAGGGCTGGTTGCTAGCGGTAGTACTAGCGAAGGAAATATTTCTGGAACGGATGAAAATAAatCCGAATCTGAAGTTGTACAGCCTACAAAAAAGAAATCCGCCTACTCCTTGGCACCGAACCGTGTCAGTTGCCCTTATTGTAGCCGAAAATTCCCGTGGACTTCTTCTTTGCGACGTCACATTCTAACTCACACCGGTCAAAAACCGTTCAAGTGCAGTCACTGTCCATTACTATTTACCACAAAGTCAAACTGCGATCGCCATCTTTTGAGGAAACATGGAAATGCCGCGACCACTATCCCAAACGAcgtacaaaataatacaaattatttaatgagAAATGTACCAGAGCGACCGTTTAAGTGCTCGAGTTGTCCAAGTAGCACTTTTTCCACTTATTCTAACCTAAAAAAGCATATAAGCTGTAAACATTCTACCAATGCCCAGGGAGATGATATTAAAGCTCAAGGTTACGAAGCTGGTAGTTCCGAAGATGAAAAACTACCAAAAAGCGACTGGGAAAAACCAACTGTATACAAACTATCTGAATCCATTCAAAATTCAGACCTTCCATATAAATGCCATCTCTGCGAAGGATCCTTTTCAGACCGACAGGACGCTCTGGATCACATTAAAGACAAGCACACCTCAGAATACGAGCTCCTTATGTCCAAAAACGCATTAGAATGTAACCCACCACTTCTTGAAGACCAATCCAACATCGAAGACGAAGATATCGAAGTCCGCGGTAAATTTCCTGATTACTCCAATCGTAAAGTAATCTGCGCTTTCTGTATGCGCAGATTTTGGTCAGCGGAAGATTTGCGCCGGCACATGCGTACTCATACTGGCGAACGACCTTTTAGTTGCGACATCTGCAAGCGAAGATTCACACTAAAACATAGCATGTTACGTCATAGAAAAAAGCACAATGTTAATTTCGAACAAGACGTCAATGTTAGCGACGAGGAAGGTAATAATGGTTCTTCTCCTTCTTATACAAAAAGTGAAGTTAACTTTACTCATAAAACCGACGAGTCTGACGGCACTGAGGGCGTTGATTTAATCAGCAATTTATTGGGATTAAGAGATAGATCCATTATTGATAAAGTTTTAGCTGCTTCAGCTGATGATGCGGCTAAACTTTTAGGAGTTAAAAATGGAGTTAGagagtaa
Protein Sequence: MESPPSPNEITKETANRSDSGIFSCTTNTTIDQTDSSKTFDSGDNRSDCSSPERKYFCPICEKMLTSQHKFTLHIRSHNNENEVQDSEKGFTCRICSKVLSSNSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSQKNESSYESDGSVDSGSSKSTEFNNNKVEKNKRKIETIDTSDKKLKLDLDSNIPQTFQCPVCERSDFNSSINLEAHLEDNHPDYPTKCQICKETFANSKLLIAHKSAVHDIAINKQPVVGFKDLTFVDFSSEKFPHIARRECEMNLHKASSGLKFQCKLCNRAFPCSNSLSIHESNCNSLVSLKHSDPNIISQPDIRRMEFFNRLNLVDNSPEKQTLTAFTSNKLREHLARAVDNTKDLADIQSILSNINLQKLQTDQNDLQSQISNKQNLDNSFDYQKTEEEESQDLFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNNNGTYHCNMCPHSSIDKAALIRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHAKTTREEVKKSIIYHPSEDPTNEELNKLVSKDDTKKISTPTEDKIPFVTPKFSELMRTSSNKLKPEIYPDLPNIKPPKSFSNINEIIRNDNMRSIKIPDEVPYIPAFTPNLSSKIQVKDMNSLKDNYENDSEEDYIEEEEEDEEQPLDLVLDLSKKRAPEKPESIAEEEPQDLTKKSSPPVQQHLPPNMNHIFAQQLLKTPPKIDPAALYATQLALYRSGFPLPSWPGFSLNPLLFSVPPTLPQNTTQELKERMQRFQLCGGSMISDEVKNLQRPFQISPPYPNGFRIEPKPEILLENNYSTPKKTEDLKPLSLNIDPSFHENINKLQSPIPPNKSDLMHSPNAVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQYWSQRQRSSVGTPGKKPQMNIKSNYCDLSIPSPNYDFCKYQKFEDTKELINEKLKYSLLSQQLSRPEYKKEVEDEDFDLVIDEHDEKTDPKTEENGHDEERKSDNKTIKAEESPDLVPVSRLLDNASQQQFKEFFKRDGEEHEVGLASEEDEEGLVASGSTSEGNISGTDENKSESEVVQPTKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNAATTIPNDVQNNTNYLMRNVPERPFKCSSCPSSTFSTYSNLKKHISCKHSTNAQGDDIKAQGYEAGSSEDEKLPKSDWEKPTVYKLSESIQNSDLPYKCHLCEGSFSDRQDALDHIKDKHTSEYELLMSKNALECNPPLLEDQSNIEDEDIEVRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICKRRFTLKHSMLRHRKKHNVNFEQDVNVSDEEGNNGSSPSYTKSEVNFTHKTDESDGTEGVDLISNLLGLRDRSIIDKVLAASADDAAKLLGVKNGVRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00026305;
90% Identity: -
80% Identity: -