Basic Information

Insect: Crepidodera aurea
Gene Symbol: RREB1
Assembly: GCA_949320105.2
Location: OX439481.2:19726445-19732685[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00028 0.035 15.7 2.6 1 23 56 78 56 78 0.98

2 16 0.00016 0.02 16.5 0.3 1 23 91 113 91 113 0.98

3 16 6.2e-05 0.0078 17.7 6.4 1 23 119 141 119 141 0.98

4 16 0.15 19 7.0 0.1 1 23 193 217 193 217 0.87

5 16 0.00047 0.059 15.0 0.3 2 23 223 245 222 245 0.91

6 16 0.26 33 6.3 1.2 1 19 291 309 291 312 0.88

7 16 0.074 9.3 8.0 0.1 1 23 438 460 438 460 0.96

8 16 1.5e-05 0.0019 19.6 0.8 1 23 469 491 469 491 0.99

9 16 0.0015 0.18 13.4 2.3 1 23 497 520 497 520 0.97

10 16 0.00051 0.064 14.8 3.0 1 23 890 913 890 913 0.97

11 16 0.00051 0.064 14.8 0.4 2 23 1106 1127 1105 1127 0.97

12 16 0.13 16 7.3 6.3 1 23 1133 1156 1133 1156 0.97

13 16 0.013 1.6 10.4 1.2 1 20 1183 1203 1183 1204 0.95

14 16 0.025 3.2 9.5 1.0 1 23 1255 1278 1255 1278 0.95

15 16 0.017 2.2 10.0 0.4 3 23 1325 1345 1323 1345 0.93

16 16 0.0017 0.21 13.2 5.5 1 23 1351 1373 1351 1373 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00028	0.035	15.7	2.6	1	23	56	78	56	78	0.98
2	16	0.00016	0.02	16.5	0.3	1	23	91	113	91	113	0.98
3	16	6.2e-05	0.0078	17.7	6.4	1	23	119	141	119	141	0.98
4	16	0.15	19	7.0	0.1	1	23	193	217	193	217	0.87
5	16	0.00047	0.059	15.0	0.3	2	23	223	245	222	245	0.91
6	16	0.26	33	6.3	1.2	1	19	291	309	291	312	0.88
7	16	0.074	9.3	8.0	0.1	1	23	438	460	438	460	0.96
8	16	1.5e-05	0.0019	19.6	0.8	1	23	469	491	469	491	0.99
9	16	0.0015	0.18	13.4	2.3	1	23	497	520	497	520	0.97
10	16	0.00051	0.064	14.8	3.0	1	23	890	913	890	913	0.97
11	16	0.00051	0.064	14.8	0.4	2	23	1106	1127	1105	1127	0.97
12	16	0.13	16	7.3	6.3	1	23	1133	1156	1133	1156	0.97
13	16	0.013	1.6	10.4	1.2	1	20	1183	1203	1183	1204	0.95
14	16	0.025	3.2	9.5	1.0	1	23	1255	1278	1255	1278	0.95
15	16	0.017	2.2	10.0	0.4	3	23	1325	1345	1323	1345	0.93
16	16	0.0017	0.21	13.2	5.5	1	23	1351	1373	1351	1373	0.98

Sequence Information

Coding Sequence: ATGGAATCTCCGCCTTCACCAAACGAAACAACCAAAGAAACAGCAAACCGAAGCGACTCCGGAATCTTCTCCTGCACCACGAACACGACCATAGACCAAACCGACAGTTCCAAAACCTTCGACAGCGGCGACAACAGAAGCGACTGCTCTTCCCCCGAACGCAAATACTTTTGTCCGATTTGCGAGAAAATGCTAACCTCTCAACATAAATTTACCCTTCACATTCGATCTCATAACAACGAAAACGAAGTACAAGACTCCGACAAGGGTTATACTTGTAGGATATGTTCCAAGGTGTTAAGTTCCAATAGCAGCCTAGATCGCCACGTCCTAGTACACAGCGGGGAACGTCCGTTTCATTGCAAATACTGTGGCGACACATTTACGACTAACGGCAATATGCATAGGCATATGAGAACTCATTCCCAACGAAACGAAAGTAGCTATGAATCAGATGGTAGCGTAGATAGCGGTAGCTCTAAAAGCACTgaatttaataacaataaagtagaaaaaaataaaagaaaaaacgaATTTGTAGATACGAACGAGAAGAAGCCGAGATTGGAATTAGATTTCCAATGTCCTGTATGCGAAAGATCAGATTTTAACTCAGCTGTTAATCTAGAAAATCATTTGGAAGACAACCATCCCGATTATCCCATCAAATGTCAAATTTGTAAAGAAACATTTGCCAATAATAAACTCCTAAATGCGCATAAATCGGCCGTCCATAATAGTGCAAATAAACAACCGGTTGTAGTTGGTTTCAAAGATTTAACTTTCGTAGATTTTTCTAGCGAAAAGTTTCCTCACATCGCTAGAAGGGAATGCGAAATAAACTTACACAAAGCTTCTAGCGGATTAAAATTCCAGTGTAAAAATTGCAACAGGGCGTTTCCATGCTCAAACTCATTAAGCATCCATGAAAGTAGCTGCAACTCACCAATATCCCTCAAGAACACAGATCTTAACGCAATTTCTCAACCTGAAATAAGaagaatggaatttttcaacggTTTAAACCTAGTTGACAATTCTCCCGAGAAGCCGACATTGACAACATTCACTTCTAACAAACTCAGAGAGCATTTAGCGAGAGCGGTAGATAATACCAAAGATTTGGCTGATATTCAGTCTATTCTATCCAATATCAACTTACAAAAACTCCAAACAGACCAAACCGAACTACAACCACAGACTCCTTCCAAGCAAAATTTAGATAATTCATTTGAATACCAAAAAACCGAGGAAGAGGAATCTCAAGATCTTTTCGCTGttgaatttagaaaaatgaaacTAAGAGGCGAATTTCCATGTAGACTTTGTACCGCTGTTTTTCCCAACTTACGAGCCTTGAAAGGTCACAACAGAGCGCACTTGAACGGTAATAATAATGGAACTTATTATTGCAATATGTGCCCTCATTCTTCCATAGATAAGGCCGCGTTAATTCGTCATATGCGCACGCACAACGGAGATAGACCTTACGAATGCGCTCTTTGTAATTACGCTTTTACCACTAAAGCTAATTGTGAAAGGCATCTCAGAAATAGACACGCCAAAACTACACGAGAAGAAGTCAAAAAGTCCATCATTTATCATCCATCAGAGGATCCTACCAATGAAGAATTGAACAAACTCGTTTGTAAAGATGACACCAGAAAATTATCTACGCCGACAGAGGAGAAAATACCATTTCTTACTCCCAAATTTTCAGAACTGATGCGCAGTAACACCAATAAGATAAAAACTGAAATATATCCAGATCTTAAACCCACCAAACCTTTCTCGAACATCAACGAAATTGTTAGAAACGATAGTTTGAGATCTATGAACATTTCAAATGACGTTCCATACATACCAGCCTTTCCACAAAATTTTTCCAACAAAATTCAAGTTAAAAATCTTAGCACTTTAAAAGATAACTACGATGAATCGGAAGATGAATACTtggacgaagaagaagaagaagaggaggAACAACCACTCGATTTGGTTTTAGATCTGAGCAAGAAAAAGCTTccagaaaaatttgaaaaaatcgtAGAAGACGAGCCACAagatttaactaaaaaatcgtcTCCTCCGATACAGCAACAATTACCTCCAAATATGAGTCAGATATTTGCACAGCAGCTGCTCAAAGCGCCTCCAAAAATCGATCCCGCTGCCTTGTACGCCACACAACTCGCTCTTTACCGCAGTGGATTTCCACTTCCAAATTGGCCAGGATTTTCTATCAATCCTTTACTATTCTCCGTGCCGCCTCCTCTACCCCAACAAAATACTTCTCAAGAACTAAAAGAAAGAATGCAACGATTCCAATTATGCGGAGGTTCTATGATATCTGACGAAATAAAAAATCTCCAAAACTTGCGATCTTTTCCAGTCTCTCCACCATATCCTAACAACGGTTTTAGAGTGGAACAGAAACCCGAAGTTTTACTAGAGAGTAATTTCTCTACTCCTAAAAAACCGGATGAATTGAAACCGTTAAGTTTGAATATAGATCctaattttcatgaaaatctaaataaattacaaaGTCCCATTCCTCAAAATAAATCTGATCTAATGCACTCACCCAACGCCGTCAAAATGGTTATTAAAAATGGAGTACTGATGCctaaacaaaaacaaaggaGATACCGAACAGAAAGACCGTTTACCTGTGAACATTGTTCAGCGAGATTTACGTTAAGATCTAATATGGAAAGGCACATTAAGCAGCAACATCCGCAATATTGGTCTCAGAGACAGAGGAGTTCGGTTGGTACACCCGGAAAAAAACCTCAAGCGACCATCAAACCGAATTACTGCGACTTAAGCATTCCTAGTCCCAATTACGACTTTTGTAAGTACCAAAAATTCGAAGATACCAAAGAATTCATCAATGAAAAGCTCAAATATTCTCTACTATCTCAACAACTTACTAGACCTgaatataaaaaagaagaggacGAGGATTGCGCTTTAGTAATAGACGAGCATGAAGACAAAGCTGATCCGAAGACTGAAGAAAATGGACATGACAAAGAAGTTAAATCTTCTAAAGCTGAAGAGAGTCCAGACTTGGTTCCTGTTTCTAGGCTGCTCGATAACGCTTCTCAGCAACAATTTAAGGAGTATTTTAAGAGGGATGGAGAGGAGCAAGAGGTTGGACTGGCTAGTGAGGAGGATGAAGAAGGTCTAGTTGCCAGTGGAAGTACTAGCGAGGGAAATGTTTCTGGAACCGATGAAAATAAATCCGAATCTGAAATTGTGCAACCAGCAAAAAAGAAATCTGCGTACTCACTAGCACCAAATCGTGTGAGTTGTCCCTACTGCAGCCGAAAATTCCCGTGGACTTCCTCGTTACGTCGCCACATCTTAACTCACACCGGACAGAAACCTTTCAAGTGTAGCCACTGTCCATTACTGTTTACCACAAAATCAAATTGCGACCGCCACCTTTTGAGGAAGCACGGTAATACCGCGACCACCATTCCAAACGAAATTCAAAATAACACAAACTATTTGATGAGAAATGTTCCAGAGAGACCGTTCAAATGTTCGAATTGTCCCAGCAGCACGTTCTCCACTTATTCGAATCTAAAAAAGCATATAAGCTGCAAACATTCCACGAATGCACAAGGCGACGATATTAAAGCACAAGGATACGAAGCTGGTAGCTCCGAAGacgaaaaaataccaaaaagtgATTGGGAAAAACCACCTGTTTACAAACTCTCCGAGTCCGTACAAAATTCAGACCTTCCCTACAAATGCCATCTGTGCGAAGGATCTTTTTCTGACAGACAAGATGCTCTCGATCACATTAAAGACAAACACACGTCAGAATACGAACTACTTATGTCAAAAAACGCTCTGGAGTCTAACCTTCCACCTCTTGAAGATCAATCCAACATAGACGACGAGGAAATCGAAGCCCGTGGTAAATTTCCCGATTACTCCAACAGGAAAGTAATTTGCGCATTCTGTATGCGTAGATTTTGGTCGGCGGAAGATTTACGTAGACACATGCGCACTCACACTGGCGAACGACCGTTTAGTTGCGACATCTGTAATCGAAGATTTACACTAAAACACAGCATGCTGCGACACAGAAAGAAGCACAACATCAATAATTTCGAACAAGACGCTAACGTTAGCGATGAAGAGGGTAATAACGGCTCATCTCCCTCTTATACGAAGAGCGAGGTTAATTTCACCCAAAAAACCGACGAGTCCGATGGAGCTGAAGGTGTCGATTTGATCAGCAATCTCTTGGGGTTAAGAGATCGATCGATAATCGACAAAGTTTTGGCCGCTTCAGCAGATGACGCCGCCAAACTCTTGGGAGTCAAAAACGGAATTAGagagtaa
Protein Sequence: MESPPSPNETTKETANRSDSGIFSCTTNTTIDQTDSSKTFDSGDNRSDCSSPERKYFCPICEKMLTSQHKFTLHIRSHNNENEVQDSDKGYTCRICSKVLSSNSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSQRNESSYESDGSVDSGSSKSTEFNNNKVEKNKRKNEFVDTNEKKPRLELDFQCPVCERSDFNSAVNLENHLEDNHPDYPIKCQICKETFANNKLLNAHKSAVHNSANKQPVVVGFKDLTFVDFSSEKFPHIARRECEINLHKASSGLKFQCKNCNRAFPCSNSLSIHESSCNSPISLKNTDLNAISQPEIRRMEFFNGLNLVDNSPEKPTLTTFTSNKLREHLARAVDNTKDLADIQSILSNINLQKLQTDQTELQPQTPSKQNLDNSFEYQKTEEEESQDLFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNNNGTYYCNMCPHSSIDKAALIRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHAKTTREEVKKSIIYHPSEDPTNEELNKLVCKDDTRKLSTPTEEKIPFLTPKFSELMRSNTNKIKTEIYPDLKPTKPFSNINEIVRNDSLRSMNISNDVPYIPAFPQNFSNKIQVKNLSTLKDNYDESEDEYLDEEEEEEEEQPLDLVLDLSKKKLPEKFEKIVEDEPQDLTKKSSPPIQQQLPPNMSQIFAQQLLKAPPKIDPAALYATQLALYRSGFPLPNWPGFSINPLLFSVPPPLPQQNTSQELKERMQRFQLCGGSMISDEIKNLQNLRSFPVSPPYPNNGFRVEQKPEVLLESNFSTPKKPDELKPLSLNIDPNFHENLNKLQSPIPQNKSDLMHSPNAVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQYWSQRQRSSVGTPGKKPQATIKPNYCDLSIPSPNYDFCKYQKFEDTKEFINEKLKYSLLSQQLTRPEYKKEEDEDCALVIDEHEDKADPKTEENGHDKEVKSSKAEESPDLVPVSRLLDNASQQQFKEYFKRDGEEQEVGLASEEDEEGLVASGSTSEGNVSGTDENKSESEIVQPAKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNTATTIPNEIQNNTNYLMRNVPERPFKCSNCPSSTFSTYSNLKKHISCKHSTNAQGDDIKAQGYEAGSSEDEKIPKSDWEKPPVYKLSESVQNSDLPYKCHLCEGSFSDRQDALDHIKDKHTSEYELLMSKNALESNLPPLEDQSNIDDEEIEARGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICNRRFTLKHSMLRHRKKHNINNFEQDANVSDEEGNNGSSPSYTKSEVNFTQKTDESDGAEGVDLISNLLGLRDRSIIDKVLAASADDAAKLLGVKNGIRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00026305;
90% Identity: -
80% Identity: -