Acer009554.1
Basic Information
- Insect
- Abscondita cerata
- Gene Symbol
- -
- Assembly
- GCA_030710515.1
- Location
- JALBCR010000206.1:131727-132140[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.3e-14 9.5e-12 46.8 0.0 1 41 15 55 15 58 0.95
Sequence Information
- Coding Sequence
- ATGCCAAGTACATACAAACGGAAGTCGCAACAACAGACATGGGACCCAGATTCAATGGAAAAAGCTATAAGGGCTGTAAGAAACGAAGAAATGGGCTTCCTCAAGGCTAGCAAAGAATTCAAAGTTCCTCGGTCGACGCTCAAAAGACGTGTAAAAGGAATAAACAAAGAagctgttgaaaataaaaaaattttgggatctTGCCGTCCAACTTTTAGTCCGGAGCAAGAAGAAGAATTAGTGCATCACATTTTAGAAATGGAAAAGCGATTCTACGGATTAACTCTACAAGATGTACGGAGACTGGCCTATCAGTTGGCTGAACGCAATAATATAGAACATAAGTTTAGTAAAGATACTAAAATGGCTGGAAAAGCATGGATTTCTGCTTTTAGAAAACGTCATCCGAACTGA
- Protein Sequence
- MPSTYKRKSQQQTWDPDSMEKAIRAVRNEEMGFLKASKEFKVPRSTLKRRVKGINKEAVENKKILGSCRPTFSPEQEEELVHHILEMEKRFYGLTLQDVRRLAYQLAERNNIEHKFSKDTKMAGKAWISAFRKRHPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00667299; iTF_00001893; iTF_00037702; iTF_00037707; iTF_01440912; iTF_00001865; iTF_01085066; iTF_00906974; iTF_01430687; iTF_00001963; iTF_00002201; iTF_00001901; iTF_00001851; iTF_00001853; iTF_00001854; iTF_00001855; iTF_00001856; iTF_00001861; iTF_00001860; iTF_00001949; iTF_00001999; iTF_00001998; iTF_00002036; iTF_00002015;
- 90% Identity
- iTF_00002036;
- 80% Identity
- iTF_00001999;