Lorn005077.1
Basic Information
- Insect
- Lithophane ornitopus
- Gene Symbol
- -
- Assembly
- GCA_948473465.1
- Location
- OX419635.1:5166982-5167320[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.5e-16 6.7e-13 48.4 0.0 1 41 15 55 15 58 0.96
Sequence Information
- Coding Sequence
- ATGCCGAGTACATACAAACGGACGTCGCAGCAACAGACATGGGACCCGGATGCGATGGAAAAAGCTATAAGAGCTGTGCGAAACGAAGAAATGGGCTTCCTCAAGgctagcaaagaattcaaagttcctcgatcgacgctcaaaagacgtgtaaaaggaataaacaaagaagctattgaaaataaaaaaatattggggtctcgccgcccaacttttagtatggagcaagaagaagaattggtgcatcacattttagaaatggaaaagcgattttacggattaactttacaggatgtacggagactggcctatcagttggctgaacgcaataatatataa
- Protein Sequence
- MPSTYKRTSQQQTWDPDAMEKAIRAVRNEEMGFLKASKEFKVPRSTLKRRVKGINKEAIENKKILGSRRPTFSMEQEEELVHHILEMEKRFYGLTLQDVRRLAYQLAERNNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00001859;
- 90% Identity
- iTF_00002036;
- 80% Identity
- -