Alot012915.1
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- -
- Assembly
- GCA_947364205.1
- Location
- OX376229.1:17492785-17493207[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-13 2.1e-10 40.6 0.0 5 41 1 37 1 39 0.95
Sequence Information
- Coding Sequence
- ATGGAAAAAGCTATAAGAGCTGTGCGAAACGAAGAAATGGGCTTCCTCAAGgctagcaaagaattcaaagttcctcgatcgacgctcaaaagacgtgttaaaggaataaacaaagaagctattgaaaataaaaaaatattggggtctcgccgcccaacttttagtatggagcaagaagaagaattggtgcatcacattttagaaatggaaaagcgattttacggattaactttacaggatgtacggagactggcctatcagttggctgaacgcaataatatagaacacaagtttaataaacatactcaaatggctggaaaagcatggatttctgcttttagaaaacgtcatctggaactgacattaagaagcccagaagcaacctctcttgctcgagcacagggctttaataaagtgtcatga
- Protein Sequence
- MEKAIRAVRNEEMGFLKASKEFKVPRSTLKRRVKGINKEAIENKKILGSRRPTFSMEQEEELVHHILEMEKRFYGLTLQDVRRLAYQLAERNNIEHKFNKHTQMAGKAWISAFRKRHLELTLRSPEATSLARAQGFNKVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00001859;
- 90% Identity
- iTF_01192547;
- 80% Identity
- iTF_00037702;