Tcit042494.1
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- -
- Assembly
- GCA_963921375.1
- Location
- OY992808.1:4254235-4254711[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-14 1.8e-11 45.0 0.0 1 41 15 55 15 57 0.95
Sequence Information
- Coding Sequence
- ATGCCGAGTACATACAAACGGACGACGCAGCAACAGACATGGGACCCGGATGCGATGGAAAAAGCTATAAGAGCTGTGCGAAACCAAGAAATGGGCTTCCTCAAGGCTAGCAAAGAATTCAAAGTTCCTCGATCGACGCTCAAAAGACGTGTAAAAGGAATAAACAAAGAagctattgaaaataaaaaaatattggggtCTCGCCGCCCAACTTTTAGTATGGAGCAAGAAGAAGAATTGGTGCATCACATTTTAGAAATGGAAAAGCGATTTTACGGATTAACTTTACAGGATGTACGGAGACTGGCCTATCAGTTGGCTGAACGCAATAATATAGAACACAAGTTTAATAAACATACTCAAATGGCTGGAAAAGCATGGATTTCTGCTTTTAGAAAACGTCATCTGGAACTGACATTAAGAAGCCCAGAAGCAACCTCTCTTGCTCGAGCACAGGGCTTTAATAAAGTGTCATGA
- Protein Sequence
- MPSTYKRTTQQQTWDPDAMEKAIRAVRNQEMGFLKASKEFKVPRSTLKRRVKGINKEAIENKKILGSRRPTFSMEQEEELVHHILEMEKRFYGLTLQDVRRLAYQLAERNNIEHKFNKHTQMAGKAWISAFRKRHLELTLRSPEATSLARAQGFNKVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00001859;
- 90% Identity
- iTF_01192547;
- 80% Identity
- -