Basic Information

Insect: Zootermopsis nevadensis
Gene Symbol: -
Assembly: GCA_000696155.1
Location: NW:121254-128309[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0034 5.5 6.6 0.2 21 43 211 233 205 237 0.90

2 12 0.0073 12 5.5 0.0 17 53 234 271 232 272 0.84

3 12 0.0041 6.7 6.3 0.1 21 46 295 320 276 327 0.84

4 12 0.029 47 3.6 0.2 21 46 323 348 320 356 0.73

5 12 0.018 30 4.2 0.3 9 48 338 378 330 384 0.76

6 12 0.0077 13 5.4 0.0 21 45 407 431 398 437 0.86

7 12 0.0034 5.5 6.6 0.2 21 43 613 635 607 639 0.90

8 12 0.0073 12 5.5 0.0 17 53 636 673 634 674 0.84

9 12 0.0041 6.7 6.3 0.1 21 46 697 722 678 729 0.84

10 12 0.029 47 3.6 0.2 21 46 725 750 722 758 0.73

11 12 0.018 30 4.2 0.3 9 48 740 780 732 786 0.76

12 12 0.0077 13 5.4 0.0 21 45 809 833 800 839 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0034	5.5	6.6	0.2	21	43	211	233	205	237	0.90
2	12	0.0073	12	5.5	0.0	17	53	234	271	232	272	0.84
3	12	0.0041	6.7	6.3	0.1	21	46	295	320	276	327	0.84
4	12	0.029	47	3.6	0.2	21	46	323	348	320	356	0.73
5	12	0.018	30	4.2	0.3	9	48	338	378	330	384	0.76
6	12	0.0077	13	5.4	0.0	21	45	407	431	398	437	0.86
7	12	0.0034	5.5	6.6	0.2	21	43	613	635	607	639	0.90
8	12	0.0073	12	5.5	0.0	17	53	636	673	634	674	0.84
9	12	0.0041	6.7	6.3	0.1	21	46	697	722	678	729	0.84
10	12	0.029	47	3.6	0.2	21	46	725	750	722	758	0.73
11	12	0.018	30	4.2	0.3	9	48	740	780	732	786	0.76
12	12	0.0077	13	5.4	0.0	21	45	809	833	800	839	0.86

Sequence Information

Coding Sequence: ATGGAGGTAATAAAAGTGGAACCAGACATAGACAGAGAAGCACTGTTGTTGGTTTCTCACAGTGCAATTTCACAGCTTGCTATAAAAGAAGAAGATCAGTCAGGTGCATTCACTTATGTTTCAGTAGAGCCTGAAAATAAGATTCATCAAGAGGATGACGTAGGACTTCAGCAGATTAGTACTGATAAAACCATACAGGGATGTGTGGAGCCGTGTCACAATTTACGTGCTGACTATAGGAGTCCACAAATGGAATCTACTGCAAGTAACAATACAATGGCTTCAAGAACAGAATACAAGTTTAGGGGCAGAttcaagaaacagaaatttgttacagatgTTCATACTTCCAACTGTACTAAATGTGGTGTTGTGTTCAAGGTTTCTAAAGCATTGACAAGCAATGACGTTAAATCTGTGGTCTGTAAAAACTGTAATGTCAAAGAAACTCCAGAACCTATAAATCTTGCAGATAACATAGAGCAGCTTCAAACATGTGATACAGGATCAACCTTTAATGGCAACAGGAAAGAACACCCTCAAAATAGTACTGAAGGTAAACCACATATGTGCCACGAGTGTGGAAAACGTTTCACACGATCCTGGGCTCTAAAAAAACATTACTGTTTGCAAGAGAAACCATACGTATGTGAAGTATGTGGAAAACAATTCACACAATCTCGTAATTTATTGGTGCACTCTCGTTCACATACTGGCGAAAAGCCTTTTGTTTGTACCATATGCAGCAGAGGTTTCTCATATTCTGGCgacttaaaaatacacatcCGTATACACACCGGGGAGAAACCGCATGTTTGCGATGTTTGTAAGAAGGCATTTTCAAAGCAAGGGAAGTTAAAAATTCACTATCGTATACATACAGGGGAGAAACCATACGTGTGCAATATATGTAAAAAAGGATTTTCAGAATCGCAGGTTCTCAAAAGACACTACCACACCCACACTGGGGAGAAACCTCACGAATGTCCAATATGTAAAAAGGGTTTCACGAAACCGGGGAAactaaaaattcattaccgCATTCATACAGGAGAGAAACCGTATGTTTGCAATGTTTGTAATAAAGGGTTTAATGAGTCCCAGGTTTTGAAAAAACATCATCGTATACACACTGGTGAGAAACCATATAAGTGTACAGTGTGCGAAAAGAAGTTCAACGATACACAGGTATTAAAGGAACATTATCGTACTCATACTGGAGAGAAGCCGTACGTCTGCAGTATTTGTATGAAATCCTTTGCTTTCTCAAAATCCTTGAAGAAACATTCTCAAATCCATACTGGACATCCCATAACAAatTATGTTTCAGTAGAGCCTGAAAATAAGATTCATCAAGAGGATGACGTAGGACTTCAGCAGATTAGTACTGATAAAACCATACAGGGATGTGTGGAGCCGTGTCACAATTTACGTGCTGACTATAGGAGTCCACAAATGGAATCTACTGCAAGTAACAATACAATGGCTTCAAGAACAGAATACAAGTTTAGGGGCAGAttcaagaaacagaaatttgttacagatgTTCATACTTCCAACTGTACTAAATGTGGTGTTGTGTTCAAGGTTTCTAAAGCATTGACAAGCAATGACGTTAAATCTGTGGTCTGTAAAAACTGTAATGTCAAAGAAACTCCAGAACCTATAAATCTTGCAGATAACATAGAGCAGCTTCAAACATGTGATACAGGATCAACCTTTAATGGCAACAGGAAAGAACACCCTCAAAATAGTACTGAAGGTAAACCACATATGTGCCACGAGTGTGGAAAACGTTTCACACGATCCTGGGCTCTAAAAAAACATTACTGTTTGCAAGAGAAACCATACGTATGTGAAGTATGTGGAAAACAATTCACACAATCTCGTAATTTATTGGTGCACTCTCGTTCACATACTGGCGAAAAGCCTTTTGTTTGTACCATATGCAGCAGAGGTTTCTCATATTCTGGCgacttaaaaatacacatcCGTATACACACCGGGGAGAAACCGCATGTTTGCGATGTTTGTAAGAAGGCATTTTCAAAGCAAGGGAAGTTAAAAATTCACTATCGTATACATACAGGGGAGAAACCATACGTGTGCAATATATGTAAAAAAGGATTTTCAGAATCGCAGGTTCTCAAAAGACACTACCACACCCACACTGGGGAGAAACCTCACGAATGTCCAATATGTAAAAAGGGTTTCACGAAACCGGGGAAactaaaaattcattaccgCATTCATACAGGAGAGAAACCGTATGTTTGCAATGTTTGTAATAAAGGGTTTAATGAGTCCCAGGTTTTGAAAAAACATCATCGTATACACACTGGTGAGAAACCATATAAGTGTACAGTGTGCGAAAAGAAGTTCAACGATACACAGGTATTAAAGGAACATTATCGTACTCATACTGGAGAGAAGCCGTACGTCTGCAGTATTTGTATGAAATCCTTTGCTTTCTCAAAATCCTTGAAGAAACATTCTCAAATCCATACTGGACATCCCATAACAAatcactga
Protein Sequence: MEVIKVEPDIDREALLLVSHSAISQLAIKEEDQSGAFTYVSVEPENKIHQEDDVGLQQISTDKTIQGCVEPCHNLRADYRSPQMESTASNNTMASRTEYKFRGRFKKQKFVTDVHTSNCTKCGVVFKVSKALTSNDVKSVVCKNCNVKETPEPINLADNIEQLQTCDTGSTFNGNRKEHPQNSTEGKPHMCHECGKRFTRSWALKKHYCLQEKPYVCEVCGKQFTQSRNLLVHSRSHTGEKPFVCTICSRGFSYSGDLKIHIRIHTGEKPHVCDVCKKAFSKQGKLKIHYRIHTGEKPYVCNICKKGFSESQVLKRHYHTHTGEKPHECPICKKGFTKPGKLKIHYRIHTGEKPYVCNVCNKGFNESQVLKKHHRIHTGEKPYKCTVCEKKFNDTQVLKEHYRTHTGEKPYVCSICMKSFAFSKSLKKHSQIHTGHPITNYVSVEPENKIHQEDDVGLQQISTDKTIQGCVEPCHNLRADYRSPQMESTASNNTMASRTEYKFRGRFKKQKFVTDVHTSNCTKCGVVFKVSKALTSNDVKSVVCKNCNVKETPEPINLADNIEQLQTCDTGSTFNGNRKEHPQNSTEGKPHMCHECGKRFTRSWALKKHYCLQEKPYVCEVCGKQFTQSRNLLVHSRSHTGEKPFVCTICSRGFSYSGDLKIHIRIHTGEKPHVCDVCKKAFSKQGKLKIHYRIHTGEKPYVCNICKKGFSESQVLKRHYHTHTGEKPHECPICKKGFTKPGKLKIHYRIHTGEKPYVCNVCNKGFNESQVLKKHHRIHTGEKPYKCTVCEKKFNDTQVLKEHYRTHTGEKPYVCSICMKSFAFSKSLKKHSQIHTGHPITNH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01567159;
90% Identity: iTF_01567159;
80% Identity: iTF_01567159;