Znev002986.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zootermopsis nevadensis
Gene Symbol
-
Assembly
GCA_000696155.1
Location
NW:121254-128309[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.24 8.6 6.4 0.2 3 17 119 133 117 134 0.90
2 20 3.5e-05 0.0013 18.5 4.4 1 21 189 209 189 210 0.93
3 20 1.1e-06 3.9e-05 23.2 0.5 1 23 215 237 215 237 0.98
4 20 2e-06 7.3e-05 22.4 0.2 1 23 243 265 243 265 0.98
5 20 9.8e-06 0.00035 20.2 1.8 1 23 271 293 271 293 0.97
6 20 0.00015 0.0055 16.5 2.8 1 23 299 321 299 321 0.98
7 20 2.9e-06 0.0001 21.9 1.0 1 23 327 349 327 349 0.98
8 20 0.0001 0.0037 17.0 1.8 1 23 355 377 355 377 0.98
9 20 7.8e-05 0.0028 17.4 2.2 1 23 383 405 383 405 0.99
10 20 0.00045 0.016 15.0 1.3 1 23 411 433 411 433 0.97
11 20 0.24 8.6 6.4 0.2 3 17 521 535 519 536 0.90
12 20 3.5e-05 0.0013 18.5 4.4 1 21 591 611 591 612 0.93
13 20 1.1e-06 3.9e-05 23.2 0.5 1 23 617 639 617 639 0.98
14 20 2e-06 7.3e-05 22.4 0.2 1 23 645 667 645 667 0.98
15 20 9.8e-06 0.00035 20.2 1.8 1 23 673 695 673 695 0.97
16 20 0.00015 0.0055 16.5 2.8 1 23 701 723 701 723 0.98
17 20 2.9e-06 0.0001 21.9 1.0 1 23 729 751 729 751 0.98
18 20 0.0001 0.0037 17.0 1.8 1 23 757 779 757 779 0.98
19 20 7.8e-05 0.0028 17.4 2.2 1 23 785 807 785 807 0.99
20 20 0.00045 0.016 15.0 1.3 1 23 813 835 813 835 0.97

Sequence Information

Coding Sequence
ATGGAGGTAATAAAAGTGGAACCAGACATAGACAGAGAAGCACTGTTGTTGGTTTCTCACAGTGCAATTTCACAGCTTGCTATAAAAGAAGAAGATCAGTCAGGTGCATTCACTTATGTTTCAGTAGAGCCTGAAAATAAGATTCATCAAGAGGATGACGTAGGACTTCAGCAGATTAGTACTGATAAAACCATACAGGGATGTGTGGAGCCGTGTCACAATTTACGTGCTGACTATAGGAGTCCACAAATGGAATCTACTGCAAGTAACAATACAATGGCTTCAAGAACAGAATACAAGTTTAGGGGCAGAttcaagaaacagaaatttgttacagatgTTCATACTTCCAACTGTACTAAATGTGGTGTTGTGTTCAAGGTTTCTAAAGCATTGACAAGCAATGACGTTAAATCTGTGGTCTGTAAAAACTGTAATGTCAAAGAAACTCCAGAACCTATAAATCTTGCAGATAACATAGAGCAGCTTCAAACATGTGATACAGGATCAACCTTTAATGGCAACAGGAAAGAACACCCTCAAAATAGTACTGAAGGTAAACCACATATGTGCCACGAGTGTGGAAAACGTTTCACACGATCCTGGGCTCTAAAAAAACATTACTGTTTGCAAGAGAAACCATACGTATGTGAAGTATGTGGAAAACAATTCACACAATCTCGTAATTTATTGGTGCACTCTCGTTCACATACTGGCGAAAAGCCTTTTGTTTGTACCATATGCAGCAGAGGTTTCTCATATTCTGGCgacttaaaaatacacatcCGTATACACACCGGGGAGAAACCGCATGTTTGCGATGTTTGTAAGAAGGCATTTTCAAAGCAAGGGAAGTTAAAAATTCACTATCGTATACATACAGGGGAGAAACCATACGTGTGCAATATATGTAAAAAAGGATTTTCAGAATCGCAGGTTCTCAAAAGACACTACCACACCCACACTGGGGAGAAACCTCACGAATGTCCAATATGTAAAAAGGGTTTCACGAAACCGGGGAAactaaaaattcattaccgCATTCATACAGGAGAGAAACCGTATGTTTGCAATGTTTGTAATAAAGGGTTTAATGAGTCCCAGGTTTTGAAAAAACATCATCGTATACACACTGGTGAGAAACCATATAAGTGTACAGTGTGCGAAAAGAAGTTCAACGATACACAGGTATTAAAGGAACATTATCGTACTCATACTGGAGAGAAGCCGTACGTCTGCAGTATTTGTATGAAATCCTTTGCTTTCTCAAAATCCTTGAAGAAACATTCTCAAATCCATACTGGACATCCCATAACAAatTATGTTTCAGTAGAGCCTGAAAATAAGATTCATCAAGAGGATGACGTAGGACTTCAGCAGATTAGTACTGATAAAACCATACAGGGATGTGTGGAGCCGTGTCACAATTTACGTGCTGACTATAGGAGTCCACAAATGGAATCTACTGCAAGTAACAATACAATGGCTTCAAGAACAGAATACAAGTTTAGGGGCAGAttcaagaaacagaaatttgttacagatgTTCATACTTCCAACTGTACTAAATGTGGTGTTGTGTTCAAGGTTTCTAAAGCATTGACAAGCAATGACGTTAAATCTGTGGTCTGTAAAAACTGTAATGTCAAAGAAACTCCAGAACCTATAAATCTTGCAGATAACATAGAGCAGCTTCAAACATGTGATACAGGATCAACCTTTAATGGCAACAGGAAAGAACACCCTCAAAATAGTACTGAAGGTAAACCACATATGTGCCACGAGTGTGGAAAACGTTTCACACGATCCTGGGCTCTAAAAAAACATTACTGTTTGCAAGAGAAACCATACGTATGTGAAGTATGTGGAAAACAATTCACACAATCTCGTAATTTATTGGTGCACTCTCGTTCACATACTGGCGAAAAGCCTTTTGTTTGTACCATATGCAGCAGAGGTTTCTCATATTCTGGCgacttaaaaatacacatcCGTATACACACCGGGGAGAAACCGCATGTTTGCGATGTTTGTAAGAAGGCATTTTCAAAGCAAGGGAAGTTAAAAATTCACTATCGTATACATACAGGGGAGAAACCATACGTGTGCAATATATGTAAAAAAGGATTTTCAGAATCGCAGGTTCTCAAAAGACACTACCACACCCACACTGGGGAGAAACCTCACGAATGTCCAATATGTAAAAAGGGTTTCACGAAACCGGGGAAactaaaaattcattaccgCATTCATACAGGAGAGAAACCGTATGTTTGCAATGTTTGTAATAAAGGGTTTAATGAGTCCCAGGTTTTGAAAAAACATCATCGTATACACACTGGTGAGAAACCATATAAGTGTACAGTGTGCGAAAAGAAGTTCAACGATACACAGGTATTAAAGGAACATTATCGTACTCATACTGGAGAGAAGCCGTACGTCTGCAGTATTTGTATGAAATCCTTTGCTTTCTCAAAATCCTTGAAGAAACATTCTCAAATCCATACTGGACATCCCATAACAAatcactga
Protein Sequence
MEVIKVEPDIDREALLLVSHSAISQLAIKEEDQSGAFTYVSVEPENKIHQEDDVGLQQISTDKTIQGCVEPCHNLRADYRSPQMESTASNNTMASRTEYKFRGRFKKQKFVTDVHTSNCTKCGVVFKVSKALTSNDVKSVVCKNCNVKETPEPINLADNIEQLQTCDTGSTFNGNRKEHPQNSTEGKPHMCHECGKRFTRSWALKKHYCLQEKPYVCEVCGKQFTQSRNLLVHSRSHTGEKPFVCTICSRGFSYSGDLKIHIRIHTGEKPHVCDVCKKAFSKQGKLKIHYRIHTGEKPYVCNICKKGFSESQVLKRHYHTHTGEKPHECPICKKGFTKPGKLKIHYRIHTGEKPYVCNVCNKGFNESQVLKKHHRIHTGEKPYKCTVCEKKFNDTQVLKEHYRTHTGEKPYVCSICMKSFAFSKSLKKHSQIHTGHPITNYVSVEPENKIHQEDDVGLQQISTDKTIQGCVEPCHNLRADYRSPQMESTASNNTMASRTEYKFRGRFKKQKFVTDVHTSNCTKCGVVFKVSKALTSNDVKSVVCKNCNVKETPEPINLADNIEQLQTCDTGSTFNGNRKEHPQNSTEGKPHMCHECGKRFTRSWALKKHYCLQEKPYVCEVCGKQFTQSRNLLVHSRSHTGEKPFVCTICSRGFSYSGDLKIHIRIHTGEKPHVCDVCKKAFSKQGKLKIHYRIHTGEKPYVCNICKKGFSESQVLKRHYHTHTGEKPHECPICKKGFTKPGKLKIHYRIHTGEKPYVCNVCNKGFNESQVLKKHHRIHTGEKPYKCTVCEKKFNDTQVLKEHYRTHTGEKPYVCSICMKSFAFSKSLKKHSQIHTGHPITNH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01567488;
90% Identity
iTF_01567488;
80% Identity
iTF_01567488;