Znev006419.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:330216-336919[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.2e-05 0.00044 19.9 0.9 1 23 131 153 131 153 0.97 2 15 0.00017 0.006 16.4 1.5 3 23 161 181 160 181 0.99 3 15 8.3e-05 0.003 17.3 0.1 1 23 312 334 312 334 0.98 4 15 0.0072 0.26 11.2 0.2 1 23 340 363 340 363 0.97 5 15 0.0001 0.0036 17.1 4.3 1 23 386 408 386 408 0.98 6 15 0.00018 0.0063 16.3 0.1 1 23 420 442 420 442 0.97 7 15 0.18 6.5 6.8 0.5 1 23 448 471 448 471 0.95 8 15 0.0015 0.054 13.4 1.7 3 19 480 496 479 500 0.94 9 15 0.00014 0.0052 16.6 6.4 1 23 506 528 506 528 0.97 10 15 0.0058 0.21 11.5 0.1 2 23 534 555 533 555 0.96 11 15 6.5e-05 0.0023 17.7 0.3 1 23 564 586 564 586 0.98 12 15 0.0043 0.15 11.9 0.2 3 23 594 614 592 614 0.97 13 15 0.00014 0.0049 16.7 0.3 1 23 620 642 620 643 0.95 14 15 0.00052 0.019 14.8 0.3 1 23 658 680 658 680 0.97 15 15 0.00056 0.02 14.7 0.2 1 20 952 971 952 974 0.93
Sequence Information
- Coding Sequence
- ATGGCACAACCTTATGAGGGGGCAGAGGTGCCAAATGTGGTACATTATATTGATAATTCTAACTGGAGAGGTCCAGGTACAGCAGATGGTGAAATGATTTGTGGAGTTGAAAATGATTGTGTGATATTTCCTAATGCCAATATTGTCTCCACCATGCCTCAGCAACAGGCTAATGAAATAGTGCAGTATACCTTCCCTGAACAGGATTTTCTGGACATACAAGTAACTGAGGAAGAAGTTATATGTGAAACATGGGATAATGGGCAACCATTAGATGATGAaagTCAACAGTTGGTGGAATTGAAGGTGGCATGCAACCCCACAGCAGAAACTGATGAAGTTGAGATACCTCTACCACAAGATCAAGATACTTACACAACAATGCGCCCTTATCCATGTGATTTCTGCAGTCGGCGTTTTCGTAAGAAAGCAAATCTTATGAACCATATGTTAGCTCACCAAACTGATCGTCCACATGGCTGCAACCTTTGTGGGGCAAGGTATCGTCGAAAATGTGATCTTATTAACCACATGAAAATACATGCATATGCTCCAGGACACCTTGGTAGTGATGATGATGAGCAAGATGTCCCAACAAACAACTCACACGACAATAACAATACTGCTTCAATGAAGGGGAGGCGGAAGAAAGCTCAGTCAGCAGCACCAAAGAAACGGAAAAATCTTACTATGGCAACCCAGGGCAGTAGTTACTTCGAGGAGGATGACAGCCTCAACTctaaagattttaaaagatCCAACTACAGCAATACTTCATCCCGCAAAAAGTTGGGGAACAGTAGTAGTGGAAGTTACAGTTACGTAGATGAAGATATGAAACTATTGTCACAACCACCTCCCACTTTTACTCCTAGCATGGAGCCACAAGAACCTACTGTACCTCGTTGGCCTGTCATTGATGAAAGTCGCCCCTATGTTTGTCAGCATTGTGGTGTGGGTTTCGCACGTGAGAAGGCGCTTGCTTCGCATGCAAGGGTTCATGCTGGTGACAGCCCATTTGAATGCAACACATGTGGGGAgatgttctgggatgttggacTGTTAAAGGAGCATTCACGCACTAAACATGCTGGAAGAAGTAGAGATGAGTCAGATGTGTCTGGACCATACACGGGTGATGATCGGTTTGGAGAGTTCCATTGTGAGACTTGTGGCCTTGGTTTCCATAGACAGGATCTTCTCAAACGTCACCGCAGAATCCATATCAAGTTTGAGCCAAACAGTAGCATGGCAACGCACGTGTGTCAAGTGTGTGGTCAGGACTTCCCCGGGCAGAGCGACCTTTTGGCACATGTTGAAACACATGCGCGCTACCAGCCACATCGCTGTATGCTGTGTGGCGAGTGTTTTTTGGATGCACCAGCTGTTGCTGCACATGTACGCCGACGGCATGCTCGTAGCATCCCACCCAATGCCTGCACCCTCTGTGGTAAAACTTGCAAAGATCGTCGCTCACTCCAGAAACATGCTTGGGTTCACTTAGCTGAACGCAGCTTTTCCTGCCACAAGTGCGGGAAACGTTTTCACAGTCGTGCGCGTCTTAAAAGGCACATGGTTTCTCATAGAGAcaaagcagtgtcttgtgaaGATTGTGGTTTGGAATTTCCTGATGGACGTGCACTTATAAACCATCGCCACAGCCATAACAAAGAACCATCAGCACGCCAATTTTCATGTGCAGAATGTGGCAAGACTTTTGGGTCACGCAGCAGTCAACAAATCCATGCACGTATCCACACTGGCGAGCGTCCATATGGATGCCGCTTCTGCTGGAAGGCATTTGCTGATGGTGGCACATTACGCAAACATGAACGCATCCACACAGGGGAGAAACCTTATGCCTGTGCTGTGTGTCCTCGTGCCTTCAACCAGCGGgTGGTACTAAGGGAACATATTCGTTCACATCACTCGGGTCCAGAGCCAAGGACATCTGGCAATCACTCAGCTGTTTATGTTTGTAAAGTGTGTGCAGCAGCTTTCAGCAGTTCAGAGCAGTTGTGTGTGCATCTGATTCAGCACAGTGACGAGAACACTGCAAAGCAACGGATGCCAAAGTTGGGGCCACGTAAATACAAGCGCCGCCGCAAGCTGAACCCTCACGAGCTCACATTGCTGTCGAGTAACATAGGCACACCACATGGAGACACATCTGCTGATGGGGAAGCAGATTCAGATAATGGTAACACCTTCAAGCGTAAAATTCCCAAAAGGAAGTTCAGACAGAAAGGCAAGTCAAATACTGATGAGAATTTTGAATCAGTTGTAAAAAGTTTTGAATCTGTAAttgaaaatttcaattcaattgtTAGCCACACAAAACCTGAGCCTGGGAAGGAGAAAGTTGATAAGGAGAAGCACAAACTCAAACGCAAATCAGCAGTCGATGGGAAGCACAGTGGAATGAAGTCTATAACTAACATGCCAGACTTGTCGTCTGGAGGGTTCGTGAAAAGCAATAGACCTGCTGGTGAGAGTAGAATAAGGCCAAGAACAAAGAATGTGACAGTGAGTACACTTGCAGCTTTGAAGGCTGTGACTTCAAAACCAAGGTCAGTTTTAAAAGTTGGCCGAGATCTGTGCAGAGTGGGACCACggacaaaaaatgtaaattaccaCAATGTGAAGATGGCAAAACTTTCTCCTGCAACATTTCCTGTTGAGAAATCCAATTTGACCGAAACTGTTTTAGATACTAAAGGTGGTGTGAATCAAGAAAATGTTGACGCTGTTTCTAAAGCAGAAAACGGAAGTGTCCCTGTGAAGTCAGAGAATGATGATAATATCATTCCCTCTTCTTTGTTGCTAGAAGATGGGAAAGAAGTGAAAGTTGAATTTACATGTGAAATGTGCAGTGAAACCTTTACAAAGCGATCTGAACTCTTGATTCATGTCCCCATACACATTTAA
- Protein Sequence
- MAQPYEGAEVPNVVHYIDNSNWRGPGTADGEMICGVENDCVIFPNANIVSTMPQQQANEIVQYTFPEQDFLDIQVTEEEVICETWDNGQPLDDESQQLVELKVACNPTAETDEVEIPLPQDQDTYTTMRPYPCDFCSRRFRKKANLMNHMLAHQTDRPHGCNLCGARYRRKCDLINHMKIHAYAPGHLGSDDDEQDVPTNNSHDNNNTASMKGRRKKAQSAAPKKRKNLTMATQGSSYFEEDDSLNSKDFKRSNYSNTSSRKKLGNSSSGSYSYVDEDMKLLSQPPPTFTPSMEPQEPTVPRWPVIDESRPYVCQHCGVGFAREKALASHARVHAGDSPFECNTCGEMFWDVGLLKEHSRTKHAGRSRDESDVSGPYTGDDRFGEFHCETCGLGFHRQDLLKRHRRIHIKFEPNSSMATHVCQVCGQDFPGQSDLLAHVETHARYQPHRCMLCGECFLDAPAVAAHVRRRHARSIPPNACTLCGKTCKDRRSLQKHAWVHLAERSFSCHKCGKRFHSRARLKRHMVSHRDKAVSCEDCGLEFPDGRALINHRHSHNKEPSARQFSCAECGKTFGSRSSQQIHARIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPEPRTSGNHSAVYVCKVCAAAFSSSEQLCVHLIQHSDENTAKQRMPKLGPRKYKRRRKLNPHELTLLSSNIGTPHGDTSADGEADSDNGNTFKRKIPKRKFRQKGKSNTDENFESVVKSFESVIENFNSIVSHTKPEPGKEKVDKEKHKLKRKSAVDGKHSGMKSITNMPDLSSGGFVKSNRPAGESRIRPRTKNVTVSTLAALKAVTSKPRSVLKVGRDLCRVGPRTKNVNYHNVKMAKLSPATFPVEKSNLTETVLDTKGGVNQENVDAVSKAENGSVPVKSENDDNIIPSSLLLEDGKEVKVEFTCEMCSETFTKRSELLIHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370389; iTF_00396570; iTF_01289147;
- 90% Identity
- -
- 80% Identity
- -