Basic Information

Insect: Reticulitermes lucifugus
Gene Symbol: -
Assembly: GCA_026260175.1
Location: JAKCWW010001813.1:33770-49542[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.5e-05 0.0015 19.5 1.0 1 23 131 153 131 153 0.97

2 15 0.00035 0.035 15.3 1.4 3 23 161 181 160 181 0.99

3 15 7.8e-05 0.0077 17.3 0.1 1 23 312 334 312 334 0.98

4 15 0.013 1.3 10.3 0.2 1 23 340 363 340 363 0.96

5 15 9.4e-05 0.0093 17.1 4.3 1 23 386 408 386 408 0.98

6 15 9e-05 0.009 17.1 0.1 1 23 420 442 420 442 0.97

7 15 0.17 17 6.8 0.5 1 23 448 471 448 471 0.95

8 15 0.0014 0.14 13.4 1.7 3 19 480 496 479 500 0.94

9 15 0.00013 0.013 16.6 6.4 1 23 506 528 506 528 0.97

10 15 0.0081 0.81 11.0 0.1 2 23 534 555 533 555 0.96

11 15 6.1e-05 0.0061 17.7 0.3 1 23 564 586 564 586 0.98

12 15 0.004 0.4 11.9 0.2 3 23 594 614 592 614 0.97

13 15 0.00013 0.013 16.7 0.3 1 23 620 642 620 643 0.95

14 15 2.4e-05 0.0024 18.9 0.6 1 23 658 680 658 680 0.97

15 15 0.00052 0.052 14.7 0.2 1 20 952 971 952 974 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.5e-05	0.0015	19.5	1.0	1	23	131	153	131	153	0.97
2	15	0.00035	0.035	15.3	1.4	3	23	161	181	160	181	0.99
3	15	7.8e-05	0.0077	17.3	0.1	1	23	312	334	312	334	0.98
4	15	0.013	1.3	10.3	0.2	1	23	340	363	340	363	0.96
5	15	9.4e-05	0.0093	17.1	4.3	1	23	386	408	386	408	0.98
6	15	9e-05	0.009	17.1	0.1	1	23	420	442	420	442	0.97
7	15	0.17	17	6.8	0.5	1	23	448	471	448	471	0.95
8	15	0.0014	0.14	13.4	1.7	3	19	480	496	479	500	0.94
9	15	0.00013	0.013	16.6	6.4	1	23	506	528	506	528	0.97
10	15	0.0081	0.81	11.0	0.1	2	23	534	555	533	555	0.96
11	15	6.1e-05	0.0061	17.7	0.3	1	23	564	586	564	586	0.98
12	15	0.004	0.4	11.9	0.2	3	23	594	614	592	614	0.97
13	15	0.00013	0.013	16.7	0.3	1	23	620	642	620	643	0.95
14	15	2.4e-05	0.0024	18.9	0.6	1	23	658	680	658	680	0.97
15	15	0.00052	0.052	14.7	0.2	1	20	952	971	952	974	0.93

Sequence Information

Coding Sequence: ATGGCAGAACCATCTGCAGGAACAGAAGTTCCAAATTTGGTACACAATGTGAATAGTTCGAACTGGAGAGGGCCAGGTGCCGAAGAAGGTGAAATGATTTGTGGCATAGGAAATGATTGTGTGATATTTCCTAATACAAGTGATGTCTCCAGCGTGCCTCAGCAACAGGGTATTGAAGTAGTGCAGTATGCTTTCCCTGAACAGGATTTTTTGGACATCCAAGTTACCGAGGAAGAAGTGATAAGTGAAACGTGGGATAATGGGCAGCCATTAGATGATGAAAGTCAGCACTTGATTGAACTGAAGGTGTCATGCAACCCCACAACAGAACCAGATGAGGTTGAGATACCATTACCACAAGATCAAGATGCTTACACAACAATGCGCCCATATCCTTGTGATTTCTGCAGTCGACGTTTTCGTAAAAAAGCAAATCTAATGACCCATATGTTGGCGCACCAGACAGATCGTCCACATGGCTGCAACCTTTGTGGAGCTCGATATCGTCGCAGATGTGACCTTATTAGCCATATGAAAATCCATGCATATGCTCCTGGACATCTTGGTAGCGATGATGATGAGGAAGATGTTCCAACAAGTAACTCACATGATCATAACAATACTGTTTCGATGAAAGGGAGGAGGAAGAAAGTGCAGTCAGCAGCACCAAAGAAACGGAAGAATATTACTACTTCAACCCAGAGTAGTACCTATATGGAAGAGAGTGATGGCCCCAACTTTAAAGATTTCAAAAGGTCCAACTACAGTAATAGTTCATCTCGTAAAAAGCTTGGGAACAGTAGTGGTGGAAGTTATAGTTATGTAGATGAAGATATGAAATTACTGTCTCAGCCACCTCCCACTTTTACTCCTAGCATGGAGCCACAAGAACCTGCCATGCCTCGCTGGCCTGTCATTGACGAAAGTCGTCCATATGTTTGTCAGCACTGTGGTGTCGGTTTTGCACGTGAGAAGGCACTTGCTTCACATGCAAGGGTGCATGCTGGAGACAGCCCATTCGAATGCAATACGTGTGGGGAGATGTTCTGGGATATCGGGCTGCTGAAGGAGCATTCACGCATGAAGCATGCTGGAAGAAGTCGAGATGAGCCTGACGCTTCTGGTCCATATACAGGCGATGATCGGTTTGGAGAGTTCCACTGTGAGACTTGTGGCCTTGGTTTCCATCGACAGGATCTTCTCAAACGTCACCGCAGAATCCATGTCAAGTTTGAGCCAAACAGTAGTATGGCAACACACGTGTGTCAGGTGTGTGGTCAGAACTTTCCTGGGCAGAGTGACCTTTTGGCGCATGTTGAAACACATGCACGCTATCAACCACATCGCTGCATGCTGTGCGGCGAGTGTTTTTTGGATGCACCGGCTGTTGCTGCACACGTGCGCCGACGGCATGCCCGTAACATCCCACCCAATGCCTGCACACTCTGTGGTAAAACTTGCAAAGATCGCCGCTCCCTCCAGAAACATGCGTGGGTCCACTTAGCTGAACGCAGCTTTTCCTGCCACAAGTGTGGGAAACGCTTTCATAGTCGTGCACGTCTTAAAAGACACATGGTTTCTCATAGAGATAAAGCAGTATCTTGTGATGAATGTGGTTTGGAATTCCCTGATGGACGTGCACTTATAAACCATCGTCACAGCCACAACAAAGAACCATCAGCACGTCAGTTTTCATGTGCTGAATGTGGGAAGACCTTTGGATCACGCAGCAGTCAACAGAtccatgcacgtatccacactggtgagcgtccttatggatgccgtttttgttggaaggcatttgctgatggcggcacactacgcaaacatgaacgcattcacacaggggagaaaccttatgcctgtgctgtgtgTCCACGTGCCTTCAACCAGCGGGTGGTACTCAGGGAACATATCCGTTCACATCATTCGGGTCCAGAGCCAAGGACATCTGGCAGTCATGTAGCAATATATGTTTGTAAAGTGTGTACAGAAGCTTTCAGCAGTTCCGAGCAGTTGTGTGCACATTTGATTCAGCACAGCGATGAAAATACTGCAAAGCAACGGATGCCTAAGTTGGGACCACGCAAATACAAGCGTCGCCGCAAACTGAACCCACATGAGCTCACTTTGCTGTCCAGTCCTGTAAATACACCTCATGGAGATGCATCTGCTGATGGGGATCCAGATTCAGATGATGGGAGCAGCTACAAGCGTAAGATTTCCAGGAAGAAATTTAGACAAAAAGGCAAGTCAAATACTGATGAAAATTTTGAATCAGTTGTAAAAAGTTTTGAGTCTGTAATTGAAAATTTAAATTCGATTGTTAGCCACTCAAAGTCCGATTCGGGGAAGGAGAAAGTCGGAAAGGATAAACACAAACCCAAACGCAGGTCAGCAGTTGATGGGAAGCACAGTGGAATGAAGTCTAGAACTAGTGTGCCAGACTTGTCATCTGGAGGGTTTGTGAAAAGTACAAGACCTGCTGGTGAGAGTAGAATAAGGCCAAGAACAAAGAACGTGACAGTGAGTACACTTGCAGCATTGAAGGCTGTATCATCAAAAACGAGGTCATTTTCAAAAGTTGGCCGAGATGTGAGCAGAATAGGTCCAAGGACAAAGAACGTAAATTACCACAATGTGAAGATGGGAAAACTTCCTACTGCAACTTTTCCTGCCAGGAGATCTAAGTTAATTGAAACTGTTATGGATACTGTACATGATATGAAACAAGAAAATGTTGAAAGTGTTTCTAAAGATGGGGGCATAAATACCGCTGTGAAATTAGAGGGTGATAATAATGTTGTAGCTTCTACTGCATTGTTAGAAGATGGAAAAGAAGTGAAAGTTGAATTTACATGTGAAATGTGCAGTGAAACATTTACAAAGCGATCTGAACTTCTGATTCATGTCCCCATACACATTTAA
Protein Sequence: MAEPSAGTEVPNLVHNVNSSNWRGPGAEEGEMICGIGNDCVIFPNTSDVSSVPQQQGIEVVQYAFPEQDFLDIQVTEEEVISETWDNGQPLDDESQHLIELKVSCNPTTEPDEVEIPLPQDQDAYTTMRPYPCDFCSRRFRKKANLMTHMLAHQTDRPHGCNLCGARYRRRCDLISHMKIHAYAPGHLGSDDDEEDVPTSNSHDHNNTVSMKGRRKKVQSAAPKKRKNITTSTQSSTYMEESDGPNFKDFKRSNYSNSSSRKKLGNSSGGSYSYVDEDMKLLSQPPPTFTPSMEPQEPAMPRWPVIDESRPYVCQHCGVGFAREKALASHARVHAGDSPFECNTCGEMFWDIGLLKEHSRMKHAGRSRDEPDASGPYTGDDRFGEFHCETCGLGFHRQDLLKRHRRIHVKFEPNSSMATHVCQVCGQNFPGQSDLLAHVETHARYQPHRCMLCGECFLDAPAVAAHVRRRHARNIPPNACTLCGKTCKDRRSLQKHAWVHLAERSFSCHKCGKRFHSRARLKRHMVSHRDKAVSCDECGLEFPDGRALINHRHSHNKEPSARQFSCAECGKTFGSRSSQQIHARIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPEPRTSGSHVAIYVCKVCTEAFSSSEQLCAHLIQHSDENTAKQRMPKLGPRKYKRRRKLNPHELTLLSSPVNTPHGDASADGDPDSDDGSSYKRKISRKKFRQKGKSNTDENFESVVKSFESVIENLNSIVSHSKSDSGKEKVGKDKHKPKRRSAVDGKHSGMKSRTSVPDLSSGGFVKSTRPAGESRIRPRTKNVTVSTLAALKAVSSKTRSFSKVGRDVSRIGPRTKNVNYHNVKMGKLPTATFPARRSKLIETVMDTVHDMKQENVESVSKDGGINTAVKLEGDNNVVASTALLEDGKEVKVEFTCEMCSETFTKRSELLIHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01567202;
90% Identity: iTF_00370389;
80% Identity: -