Csec009773.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:193957-224780[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.6e-05 0.0016 18.3 1.5 1 23 130 152 130 152 0.96 2 15 0.027 0.77 9.8 1.4 3 23 160 180 158 180 0.97 3 15 0.00011 0.0032 17.3 0.1 1 23 311 333 311 333 0.98 4 15 0.0035 0.1 12.6 0.2 1 23 339 362 339 362 0.98 5 15 0.00014 0.0039 17.1 4.3 1 23 385 407 385 407 0.98 6 15 0.0087 0.25 11.4 0.0 2 23 420 441 420 441 0.96 7 15 0.25 7 6.8 0.5 1 23 447 470 447 470 0.95 8 15 0.0021 0.059 13.4 1.7 3 19 479 495 478 499 0.94 9 15 0.00058 0.017 15.1 6.3 1 23 505 527 505 527 0.97 10 15 0.012 0.33 11.0 0.1 2 23 533 554 532 554 0.96 11 15 8.9e-05 0.0025 17.7 0.3 1 23 563 585 563 585 0.98 12 15 0.0058 0.17 11.9 0.2 3 23 593 613 591 613 0.97 13 15 8.2e-05 0.0023 17.8 0.3 1 23 619 641 619 642 0.96 14 15 0.00046 0.013 15.4 0.2 1 23 657 679 657 679 0.97 15 15 0.00076 0.022 14.7 0.2 1 20 950 969 950 972 0.93
Sequence Information
- Coding Sequence
- ATGGCGCAGTCATCTGAAGGAACAGAGGTGCCAGATATGGTACATAGTTCCAATAATGCTAACTGGGGAACTCCAGGTGCAGCAGATGGTGAAGTAGTTTGTGGTGTAGGAAATGACTGTGTGATGTTTCCTAATATCGTTGTCATCTCCAGTGTGCCTCAGCAACAGGATAATGAAATAGTGGAGTATTTCCCTGAACAGGATTTTTTGGATATCCAAGTTACTGAGGAAGAAGTGATAAGTGAAACATGGGATAATGGACAGCCATTAGATGAAGAAAGTCAGCACTTGATGGAACTAAAGGTGGCATGCAACCCCACAACAGAACCTGACGAAGTCGAGATACCATTACCACAGGATCAAGATGCGTACACAACAATGCGCCCATATCCCTGTGATTTCTGCAGCCGGCGATTTCGTAAGAAAGCAAATCTGATGAACCACATGTTTGCCCACCAGACAGATCGTCCGTATGGGTGCAACCTCTGTGGGGCTCGATATCTTCGCAAATGTGACCTTATGAACCATATGAAAATCCATGCATATGCACCTGGACATCTTGgtagtgatgatgatgaggatgatgtTCCAGTGAATAACTCAAACAGGAATAACAATACTGCTTCACTGAAGGGGAGGAGAAAGAAAGCACAGTCAGCAGCACCAAAGAAACGGAAAAATCTTACTGCTGCAGCACAAGATGGCAGTTATTTGGAGGAGGATGACAGCCTCAACTCTAAAGATTTCAAAAGATCCAACTATAGCAATGCCTTGTTGCGTAAAAAGCTTGGGAACAGTAGTAGTGGAAGTTACAGTTATGTGGATGAAGATGTGAAATTATTGTCACAACCACCTCCTACTTCTACTCCCAGCATGGAGCCACAAGAACCTGCCATGCCTCGTTGGCCAGTTATTGATGAAAGTCGGCCGTATGTTTGTCAGCACTGTGGTGTAGGTTTTGCACGTGAGAAAGCACTTGCTTCACATGCAAGGGTTCATGCTGGAGACAGCCCATTTGAATGCAACACATGTGGGGAGATGTTCTGGGATCTTGGGCTCTTGAAGGAGCATTCACGCACAAAGCATGCTGGAAGAAGTCGGGATGAGCCGGATATTTCTGGTCCATATACGGGTGATGATCGGTTTGGAGAGTTCCACTGTGAGACTTGTGGCCTTGGTTTTCATCGACAGGATCTTCTTAAACGTCACCGGAGAATCCATGTCAAGTTTGAGCCAAACAGCAGTGCAATGGCAAACGTATGTCAGGTGTGTGGTCAGGACTTCCCTGGGCAGAACGACCTTTTGGCGCATGTTGAATCACATGCACGTTATCAGCCTCATCGCTGTATGTTGTGCGGCGAGTGTTTTTTGGATGCACCAGCTGTTGCTGCACACGTCCGACGACGGCATGCTCGTAACATCCCGCCCAATGCCTGCACCCTCTGTGGTAAAACTTGCAAAGATCGTCGCTCACTCCAGAAACATGCTTGGGTCCACCTAGCTGAACGCAGCTTTTCATGCCACAGGTGTGGCAAACGCTTTCACAGTCGTGCACGTCTTAAAAGACACATGGTTTCTCACAGAGACAAAGCAGTGTCTTGTGAAGAATGTGGGCTGGAATTCCCTGATGGACGTGCACTTATAAACCATCGTCACAGCCATAACAAAGAACCATCAGCACGCCAGTTTTCATGTGCAGAATGTGGAAAAACCTTTGGGTCGCGAAGCAGTCAACAGATTCATGCGCGAATCCACACTGGTGAGCGTCCATATGGATGCCGCTTCTGCTGGAAGGCATTTGCTGATGGTGGCACATTACGCAAACATGAACGCATTCACACAGGAGAGAAACCTTATGTATGTGCTGTGTGTCCTCGTGCCTTCAACCAGCGGGTGGTACTAAGAGAACATATCCGTTCACATCATTCGGGTCCAGAGCCAAGGACATCTGGGACTCACGCAGCAGTATATGTCTGTAAAGTGTGTGCGGCAGCTTTCAGCAGTTCTGAGCAGTTATGTGCACATCTGATCCAGCACAGTGATGAAAATACTGCAAAACAACGGATGCCCAAGTTGGGGCCGCGTAAATACAAGCGCCGTCGCAAGCTGAACCCTCATGAGCTCACATTGCTGTCTAGTGCTGTGGGTACGACTCCTGGAGACACATCTGCTGATGGGGAGCCAGATTCAGATGATCGGACCAACTACAAGCATAAGATTGCCAAGAAGAAGTTTAGACAAAAAGGCAAGTCAAATACTGGTGAAAATTTTGAATCAGTTGTAAAAAGTTTTGAGTCTGTAATTGAAAATTTCAATTCGATTGTTAGCCACTCAAAATCGGAACCTGGGAAGGAGAAAGTTGAAAAGGAGAAGCACAAACCCAAACGGAAATCAGCGGTGGATGGGAAACATAGTGGAACAAAGTCCAGAACTAATGTACCAGACCTGTCATCCGGAGGATTTGTGAAAAGTACGAGACCTGCTGGTGAAAGTAGAGTAAGGCCAAGAACAAAGAATGTGACAGTGAGTACACTTGCAGCTTTAAAGGCTGTAACTTCAAAACCAAAGTCAGCTTTGAAAGCTGGCCGAGATGTAAGCAGAGTGGGACCAAGGACAAAGAATGTAAATTACCACAATGTCAAGATGGCAAAACTTCCTACAGCAACTTTTCCTGTTGGGAAATCTAAGTTGACAAAAACTGTTATACACTCTGTACGCGATTTGAAACAAAAAAATGTTGAATCTCTTCCTAAAGATAGGAACGAATGTGCCATTGTCAAGTCAGAGAGTGATTTTAATATTGACTCTGCTGCATTGTTAGAAGATGGGAAAGAAGTGAAAGTTGAATTTACATGTGAAATGTGCAGTGAAACCTTCACAAAGCGATCTGAACTTTTGATTCATGTCCCTATACACATTTAA
- Protein Sequence
- MAQSSEGTEVPDMVHSSNNANWGTPGAADGEVVCGVGNDCVMFPNIVVISSVPQQQDNEIVEYFPEQDFLDIQVTEEEVISETWDNGQPLDEESQHLMELKVACNPTTEPDEVEIPLPQDQDAYTTMRPYPCDFCSRRFRKKANLMNHMFAHQTDRPYGCNLCGARYLRKCDLMNHMKIHAYAPGHLGSDDDEDDVPVNNSNRNNNTASLKGRRKKAQSAAPKKRKNLTAAAQDGSYLEEDDSLNSKDFKRSNYSNALLRKKLGNSSSGSYSYVDEDVKLLSQPPPTSTPSMEPQEPAMPRWPVIDESRPYVCQHCGVGFAREKALASHARVHAGDSPFECNTCGEMFWDLGLLKEHSRTKHAGRSRDEPDISGPYTGDDRFGEFHCETCGLGFHRQDLLKRHRRIHVKFEPNSSAMANVCQVCGQDFPGQNDLLAHVESHARYQPHRCMLCGECFLDAPAVAAHVRRRHARNIPPNACTLCGKTCKDRRSLQKHAWVHLAERSFSCHRCGKRFHSRARLKRHMVSHRDKAVSCEECGLEFPDGRALINHRHSHNKEPSARQFSCAECGKTFGSRSSQQIHARIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYVCAVCPRAFNQRVVLREHIRSHHSGPEPRTSGTHAAVYVCKVCAAAFSSSEQLCAHLIQHSDENTAKQRMPKLGPRKYKRRRKLNPHELTLLSSAVGTTPGDTSADGEPDSDDRTNYKHKIAKKKFRQKGKSNTGENFESVVKSFESVIENFNSIVSHSKSEPGKEKVEKEKHKPKRKSAVDGKHSGTKSRTNVPDLSSGGFVKSTRPAGESRVRPRTKNVTVSTLAALKAVTSKPKSALKAGRDVSRVGPRTKNVNYHNVKMAKLPTATFPVGKSKLTKTVIHSVRDLKQKNVESLPKDRNECAIVKSESDFNIDSAALLEDGKEVKVEFTCEMCSETFTKRSELLIHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01567202;
- 90% Identity
- -
- 80% Identity
- -