Basic Information

Insect: Zootermopsis nevadensis
Gene Symbol: -
Assembly: GCA_000696155.1
Location: NW:332722-357324[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00018 0.0065 16.3 1.4 1 23 516 538 516 538 0.96

2 18 0.033 1.2 9.1 3.2 1 20 544 563 544 566 0.92

3 18 1.4e-05 0.00052 19.7 0.7 1 23 572 594 572 594 0.99

4 18 0.00044 0.016 15.1 3.6 3 21 602 620 600 622 0.94

5 18 3.5e-05 0.0012 18.5 4.6 1 23 628 650 628 650 0.99

6 18 3.5e-05 0.0012 18.5 5.3 1 23 656 678 656 678 0.97

7 18 1.7e-06 6.1e-05 22.6 3.9 1 23 684 706 684 706 0.96

8 18 1.3e-07 4.6e-06 26.2 2.7 1 23 712 734 712 734 0.98

9 18 9.5e-05 0.0034 17.1 6.7 1 23 740 762 740 762 0.97

10 18 5.6e-05 0.002 17.9 5.8 1 23 768 790 768 790 0.97

11 18 7.8e-07 2.8e-05 23.7 2.9 1 23 796 818 796 818 0.98

12 18 1.2e-05 0.00042 20.0 7.8 1 23 824 846 824 846 0.98

13 18 3.7e-05 0.0013 18.4 9.1 1 23 852 874 852 874 0.98

14 18 1.2e-05 0.00042 20.0 7.7 1 23 880 902 880 902 0.98

15 18 0.0014 0.049 13.5 8.8 1 21 908 928 908 930 0.94

16 18 0.00015 0.0055 16.5 0.4 1 23 936 958 936 958 0.98

17 18 0.042 1.5 8.8 4.5 1 23 968 990 968 990 0.98

18 18 9.1e-07 3.3e-05 23.5 0.9 1 23 996 1018 996 1018 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00018	0.0065	16.3	1.4	1	23	516	538	516	538	0.96
2	18	0.033	1.2	9.1	3.2	1	20	544	563	544	566	0.92
3	18	1.4e-05	0.00052	19.7	0.7	1	23	572	594	572	594	0.99
4	18	0.00044	0.016	15.1	3.6	3	21	602	620	600	622	0.94
5	18	3.5e-05	0.0012	18.5	4.6	1	23	628	650	628	650	0.99
6	18	3.5e-05	0.0012	18.5	5.3	1	23	656	678	656	678	0.97
7	18	1.7e-06	6.1e-05	22.6	3.9	1	23	684	706	684	706	0.96
8	18	1.3e-07	4.6e-06	26.2	2.7	1	23	712	734	712	734	0.98
9	18	9.5e-05	0.0034	17.1	6.7	1	23	740	762	740	762	0.97
10	18	5.6e-05	0.002	17.9	5.8	1	23	768	790	768	790	0.97
11	18	7.8e-07	2.8e-05	23.7	2.9	1	23	796	818	796	818	0.98
12	18	1.2e-05	0.00042	20.0	7.8	1	23	824	846	824	846	0.98
13	18	3.7e-05	0.0013	18.4	9.1	1	23	852	874	852	874	0.98
14	18	1.2e-05	0.00042	20.0	7.7	1	23	880	902	880	902	0.98
15	18	0.0014	0.049	13.5	8.8	1	21	908	928	908	930	0.94
16	18	0.00015	0.0055	16.5	0.4	1	23	936	958	936	958	0.98
17	18	0.042	1.5	8.8	4.5	1	23	968	990	968	990	0.98
18	18	9.1e-07	3.3e-05	23.5	0.9	1	23	996	1018	996	1018	0.96

Sequence Information

Coding Sequence: ATGAATGCTGAGCAGCACACATTGGCTGTACCAACTTCCTCGACGGCTCCTCCTGAGGAAGCAACACATCCTGGTGCCCTTCAAAGACATACAGGGACGCCAACAGACCTGCGTGTTGGAACAGCTGTTGCGCTGTCCAGTGTGGCCAAGTATTGGGTACTTACCAACCTGTTTCCAGGTCCCATTCCCCAAGTTTCAGTATATGGGCTGCATCCTCCTAGAcCATGTGACAATGGAAAACCTGGAGGAGGCCAGGAAGGACTATctcagcagcagcaacagcagcagcagcagcactGCATGACGGGTCCCCCAGGCATAGGTGTAACCACTGAAACCATGGCACTTGTTCCTCATCATCCGCAGCATGCTCATGCACAGCAGATACCTGTGACAGCTGTCCAGGCAGCGCTGACAACTACTGCAGGAGGCGTTGCTACTCTGTCACTTCCACCACACTCTGTGGCTGCACAGCAACAGCACCTGGAAGTGACAGGAGCAGGTACTGGAACTGCTACAGTTGTATTGACAAGTGAAGAGGTAGACAAAGACAAGCTCGACAAGGGGACATGTACCACAGAGCGTTGTGGTGAAAACCAGGTCCACTGCCAAGTGCAGTGTGATCTTCAGTTGGTGAATGCAGCTGCAGTTGCAGCACAGACTCAGCAACAAGCCAGTGAGCAGTTAGCAgcacagcagcagcagcagcaacagcaacaacaacaacaacaacaacaacagcaacatcatcaacagcagcagcagcagcaacaacaacaacaacaacagagtATGGCTGCGCAGCTGTCACAGCAGCAGTTGCATCAGTTGAACCAGCATCAGGCTGTGGCTGTACATCAGGCTGCCTTgtcacagcagcagcagcagcagcagcagcaacaacaacaacaacaacaacaacaacaacaacagcagcagcagcagcagtcaGGAGCAGCAGGGGATGGTACTGGACCTGGTACTAATGGGGCAGGCAATAGCGTTATGCAGACTGCAGTGCCTACCCCAGCATCTTCACAGGAAGTTGGAACTCAGATGGATCCAGTTGCAGCACCACCAGTAGGTCCTGATCAGCAACACCAGGTGAAAGATGAGATAAAACCCACAATCAGTGGCTGTGCCAAGGACATGCGCAATTTGCCCATGCCTGGGTTTCCAGTACAAGACATCAAGGGTCACATGATGGACATTCGTACTGCAGATGGTAGCATAGTGAAGATCAGTACCCCGGGGAATGGAGACCAAGAACTGACCAAGACATTGGGCGTTGAGATGGTTCAGAACATGTACAAGGTAAATGTGGAAGACATCAATCAGTTGCTGGCATACCACGAAGTATTTGGAAAGCTTCAAAATGAAATAGCTGTGGCAGCTGGAACTGCAAATGCAGGTGCAGTTCTGCAGAGTCCAGGAGGTGTGAAGTCCTCTTGTAGTGAGGTCGGTGGTGCAGGAGCAAGTAATACAGCCACAGCAAGCACTGCCACATCCCCTGCTACAGCAGCTGTCATCACTGCACCAGGCACTCACATCTGTGACATATGCAGCAAGATCTTTCCTTTCCGGTATCAACTTATAGTCCATCGACGCTACCACACAGAACGAAAACCCTTCACTTGCCAGgtttgtGGGAAAGCATTCACATGTGCAGCTGAACTGAGCCGGCATGGCAAGTGTCACCTTGGTGGTAGCATGTACACATGTGCAGTGTGTTTCCATGTGTTTGCTAATGCTGCAAGTCTTGAGCGGCACATGAAACGGCATGCAACAGATAAACCATATGGATGCACAGTGTGTGGCAAGTCATTTGCACGTAAAGAACACCTAGACAATCATACACGTTGTCACACGGGCGAAACACCATATCGTTGCCAGTATTGTGCCAAAACGTTTACTCGTAAAGAACATATGGTCAACCATGTACGTAAACATACTGGTGAAACACCTCATCGATGTGATATATGCAAGAAGTCTTTCACACGAAAAGAGCACTTCATGAATCATGTCATGTGGCACACTGGCGAGACACCACATGCATGTCAGGTGTGTGGTAAGAAGTATACACGCAAAGAACATCTTGCAAACCACATGCGCTCACACACTAATGACACACCTTTTCGCTGTGAAATATGTGGGAAGAGTTTTACTCGTAAGGAGCACTTCACAAATCACATCATGTGGCATACAGGAGAAACACCCCACCGCTGTGATTTTTGCTCTAAAACATTTACCCGTAAGGAACACCTTCTCAACCATGTGCGCCAGCATACAGGAGAGTCTCCTCATCGTTGTGGTTTCTGCTCCAAGTCATTCACACGCAAGGAACATCTTATTAATCATGTGCGACAGCATACAGGTGAGACACCTTTCCGCTGTCAGTATTGCCCCAAGGCATTTACTCGAAAGGACCATCTGGTGAACCATGTGCGTCAGCATACAGGGGAATCTCCCCATAAATGCCAGTACTGCACCAAATCCTTTACACGGAAAGAGCATCTGACCAATCATGTTCGACAACATACAGGCGAGTCTCCACATAGATGCCATTTCTGTTCCAAATCCTTCACACGCAAAGAGCACTTGACCAATCATGTACGCATTCACACAGGTGAATCTCCGCACCGCTGTGAGTTCTGCAACAAAACATTCACTCGTAAAGAACACCTGACTAATCACCTGCGCCAGCACACTGGAGAGACTCCCCATTGCTGCAATGTTTGCTCTAAACCATTCACCCGCAAAGAGCACCTCATCAATCACATGCGGTGTCATACTGGGGAGCGTCCATTCAGCTGCTCAGAGTGTGGGAAGGCATTCCCACTCAAGGGGAATCTGCTTTTCCACCAGCGTTCTCACAACAAAGGGGCAGCAGCTGAACGACCATTTCGTTGTGACCTCTGTCCAAAGGACTTCATGTGCAAGGGACACCTCGTCTCACATAGGCGCTCACATTCAGGAGACCGCCCACATGCCTGTCCCGATTGTGGCAAGACCTTTGTTGAAAAGGGCAACATGCTTCGCCATCTGCGCAAACATGTGGCCGAAGGAAGTGGGGCAGGTGCAGCTCAGCCTCAACCACCTCCACAAGGACATCACCAGAATCCTGCTGTGGCAGGACACGGGGTTGTGGTTCCAACCACACATCACCTCCAACACCATCCTCCTCCACCACCACCTTTACAGCCACATCCCACACACACTGCTGTGGTTGTCCCCACACCTAATGGGGTTTTGGCCACGTACTGA
Protein Sequence: MNAEQHTLAVPTSSTAPPEEATHPGALQRHTGTPTDLRVGTAVALSSVAKYWVLTNLFPGPIPQVSVYGLHPPRPCDNGKPGGGQEGLSQQQQQQQQQHCMTGPPGIGVTTETMALVPHHPQHAHAQQIPVTAVQAALTTTAGGVATLSLPPHSVAAQQQHLEVTGAGTGTATVVLTSEEVDKDKLDKGTCTTERCGENQVHCQVQCDLQLVNAAAVAAQTQQQASEQLAAQQQQQQQQQQQQQQQQQHHQQQQQQQQQQQQQSMAAQLSQQQLHQLNQHQAVAVHQAALSQQQQQQQQQQQQQQQQQQQQQQQQQSGAAGDGTGPGTNGAGNSVMQTAVPTPASSQEVGTQMDPVAAPPVGPDQQHQVKDEIKPTISGCAKDMRNLPMPGFPVQDIKGHMMDIRTADGSIVKISTPGNGDQELTKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQNEIAVAAGTANAGAVLQSPGGVKSSCSEVGGAGASNTATASTATSPATAAVITAPGTHICDICSKIFPFRYQLIVHRRYHTERKPFTCQVCGKAFTCAAELSRHGKCHLGGSMYTCAVCFHVFANAASLERHMKRHATDKPYGCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHACQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLINHVRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCNKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRCHTGERPFSCSECGKAFPLKGNLLFHQRSHNKGAAAERPFRCDLCPKDFMCKGHLVSHRRSHSGDRPHACPDCGKTFVEKGNMLRHLRKHVAEGSGAGAAQPQPPPQGHHQNPAVAGHGVVVPTTHHLQHHPPPPPPLQPHPTHTAVVVPTPNGVLATY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00210017;
90% Identity: iTF_01289132; iTF_00396505;
80% Identity: -