Basic Information

Insect: Cryptotermes secundus
Gene Symbol: -
Assembly: GCA_002891405.2
Location: NW:10453-45928[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00024 0.0069 16.3 1.4 1 23 494 516 494 516 0.96

2 18 0.045 1.3 9.2 3.2 1 20 522 541 522 544 0.92

3 18 1.9e-05 0.00055 19.8 0.7 1 23 550 572 550 572 0.99

4 18 0.00058 0.017 15.1 3.6 3 21 580 598 578 600 0.94

5 18 4.6e-05 0.0013 18.6 4.6 1 23 606 628 606 628 0.99

6 18 4.6e-05 0.0013 18.6 5.3 1 23 634 656 634 656 0.97

7 18 2.3e-06 6.5e-05 22.7 3.9 1 23 662 684 662 684 0.96

8 18 1.7e-07 4.9e-06 26.2 2.7 1 23 690 712 690 712 0.98

9 18 0.00013 0.0036 17.2 6.7 1 23 718 740 718 740 0.97

10 18 7.4e-05 0.0021 17.9 5.8 1 23 746 768 746 768 0.97

11 18 1e-06 3e-05 23.7 2.9 1 23 774 796 774 796 0.98

12 18 1.6e-05 0.00044 20.0 7.8 1 23 802 824 802 824 0.98

13 18 4.9e-05 0.0014 18.5 9.1 1 23 830 852 830 852 0.98

14 18 4.1e-05 0.0012 18.7 7.6 1 23 858 880 858 880 0.98

15 18 0.0018 0.052 13.5 8.8 1 21 886 906 886 908 0.94

16 18 0.0002 0.0058 16.5 0.4 1 23 914 936 914 936 0.98

17 18 0.056 1.6 8.8 4.5 1 23 946 968 946 968 0.98

18 18 1.2e-06 3.5e-05 23.5 0.9 1 23 974 996 974 996 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00024	0.0069	16.3	1.4	1	23	494	516	494	516	0.96
2	18	0.045	1.3	9.2	3.2	1	20	522	541	522	544	0.92
3	18	1.9e-05	0.00055	19.8	0.7	1	23	550	572	550	572	0.99
4	18	0.00058	0.017	15.1	3.6	3	21	580	598	578	600	0.94
5	18	4.6e-05	0.0013	18.6	4.6	1	23	606	628	606	628	0.99
6	18	4.6e-05	0.0013	18.6	5.3	1	23	634	656	634	656	0.97
7	18	2.3e-06	6.5e-05	22.7	3.9	1	23	662	684	662	684	0.96
8	18	1.7e-07	4.9e-06	26.2	2.7	1	23	690	712	690	712	0.98
9	18	0.00013	0.0036	17.2	6.7	1	23	718	740	718	740	0.97
10	18	7.4e-05	0.0021	17.9	5.8	1	23	746	768	746	768	0.97
11	18	1e-06	3e-05	23.7	2.9	1	23	774	796	774	796	0.98
12	18	1.6e-05	0.00044	20.0	7.8	1	23	802	824	802	824	0.98
13	18	4.9e-05	0.0014	18.5	9.1	1	23	830	852	830	852	0.98
14	18	4.1e-05	0.0012	18.7	7.6	1	23	858	880	858	880	0.98
15	18	0.0018	0.052	13.5	8.8	1	21	886	906	886	908	0.94
16	18	0.0002	0.0058	16.5	0.4	1	23	914	936	914	936	0.98
17	18	0.056	1.6	8.8	4.5	1	23	946	968	946	968	0.98
18	18	1.2e-06	3.5e-05	23.5	0.9	1	23	974	996	974	996	0.96

Sequence Information

Coding Sequence: ATGATGAATGCCGAGCAGCACACATTAACTGTACCAGCATCTTCAGCAGCTCCACCTGAtGAAGCAACACATCCTGGTGCCCTTCAGAGACATACAGGGACTCCAGCAGATCTGCGTGTTGGCACAGCTGTTGCACTGTCCAGTGTGGCCAAATATTGGGTACTCACCAACCTATTTCCAGGTCCAATCCCACAAGTGTCTGTATATGGACTGCATCCTCCTAGACCATGTGACAGTGGAAAGCCTGGTGGAGGTCAGGAAGGTCTACctcagcagcaacagcaacagcattGCCTGACGGGACCTCCGGGCATTGGTGTGACTGAAACCATGGCACTGGTTCCTCACCACCCTCAGCATACCCACCCACAGCAAATACCTGTGACAGCCGTTCAGGCGGCACTGACAACTACTGCTGGAGGTGTAACTACCCTGTCAATTCCACCGCAGCAACATCTTGAGGTAGCAGGAGCAGGTGGTGCAACAGCAACAGTTATGTTGACAAGTGAGGAGGTAGACAAAGACAAACTGGACAAGGGGACATGTACCACAGAGCGTTGTGGCGAGAACCAGGTGCACTGCCAAGTGCAGTGCGATCTTCAGTTGGTGAATGCAGCTGCAGTTGCAGCACAGACTCAGCAGCAAGCCAATGAGCAGTTAGCAgctcagcagcagcagcaacaacaacagcaacatcagcagcaacagcaacaacagcaacaacagcatCAGGCCATGGCTACACAGCTAACTCAGCAGCAGTTGCAACAGCTGAACCAGCAGCAAGCTGCAGCTGCACACCAGGTTGCCTTGTCACAGCAAcatcagcagcaacagcaacagcaacagcaacaacaacaacatcagcatcaacaacagcaacagccaGGGGCAGCAGGAGATGGTACAGGACCTATTGCTAACGGGGCAGCCAACAATGTTATGCAGGCCCCAGTACCTGCACCTTCATCTTCACAGGAAGTTGGAACACAGATGGATCCAGCTGGAGTACCCCCTGTAGGACCTGATCAACACCAGGTGAAAGATGAGGTGAAGCCTACCATCAGTGGTTGTGCCAAGGATATCCGCAATTTGCCCATGCCTGGGTTCCCAGTACAAGACATCAAGAGTCACATGATGGACATTCGcactgcagatggcagcatAGTTAAGATCAGCACCCCAGGAAATGGAGACCAGGAGCTAACTAAGACATTGGGCGTGGAGATGGTTCAGAACATGTACAAGGTGAACGTGGAGGACATCAATCAGTTGCTAGCGTACCATGAGGTATTTGGAAAGCTGCAGAATGAAATGGCAGTGGCAGCTGGAACTGTGACTGCAGGTGCAGTTCTGCAGAGTCCAGGAGGTGTCAAATCATCCTGCAGTGAGGTTGGTGGCGCAGGAGGAAGCAATACAGCCACAGCAAGCACTGCCACATCCCCTGCTACCACAGCTGTTATCACAGCACCAGGCACTCACATCTGTGACATATGCAGCAAGATCTTTCCTTTCCGGTATCAACTTATAGTCCATCGGCGCTATCACACAGAGCGCAAACCCTTCACTTGTCAGGTTTGTGGAAAAGCATTCACATGTGCAGCTGAGCTGAGCCGGCACGGTAAATGTCACCTTGGCGGTAGCATGTACACATGTGCAGTGTGTTTTCATGTATTTGCCAATGCCGCAAGTCTTGAGCGGCACATGAAACGGCACGCAACAGACAAACCGTATGGATGCACAGTTTGTGGCAAGTCATTTGCACGTAAAGAACACTTAGACAACCATACACGTTGTCATACGGGTGAGACACCATATCGTTGCCAGTACTGTGCCAAAACGTTTACTCGTAAAGAACACATGGTGAATCACGTGCGCAAACATACTGGTGAAACACCTCACCGATGCGATATATGCAAGAAGTCTTTCACACGAAAGGAGCACTTTATGAATCATGTCATGTGGCACACAGGCGAGACACCACATGCTTGTCAGGTATGTGGTAAGAAGTATACACGTAAGGAGCATCTTGCAAACCACATGCGCTCACACACCAATGATACACCTTTCCGCTGTGAAATATGTGGAAAGAGTTTTACTCGTAAGgagcacttcacaaatcacatCATGTGGCATACAGGAGAAACACCTCACCGTTGTGACTTTTGCTCTAAGACATTTACTCGTAAGGAACACCTTCTCAACCATGTGCGCCAGCATACAGGAGAGTCCCCTCACCGTTGTGGTTTTTGCTCCAAGTCATTCACTCGCAAGGAGCATCTTATTAATCATGTACGACAGCATACAGGTGAGACACCATTCCGCTGTCAGTATTGCCCCAAAGCATTCACTCGAAAGGACCATCTGGTGAATCATGTGCGTCAGCACACAGGCGAATCCCCCCATAAGTGCCAGTACTGCACCAAATCCTTCACCCGAAAGGAGCATTTGACCAATCATGTACGACAACATACAGGCGAGTCTCCACACAGATGCCATTTCTGTTCCAAATCTTTTACACGCAAGGAGCACTTGACGAATCATGTGCGCATCCACACAGGTGATTCTCCACACCGCTGTGAGTTCTGCAGCAAAACATTTACTCGCAAAGAACATTTGACTAATCACCTGCGCCAGCATACAGGAGAGACTCCCCATTGCTGCAATGTTTGCTCGAAACCATTCACCCGCAAAGAGCACCTGATCAATCACATGCGATGTCATACTGGTGAACGTCCATTTAGTTGCTCGGAGTGTGGCAAGGCATTCCCACTCAAGGGTAATCTGCTTTTCCACCAGCGTTCTCACAACAAAGGGGCAGCAGCTGAACGACCATTTCGTTGTGACCTCTGTCCAAAGGACTTCATGTGTAAGGGACATCTTGTTTCACATCGGCGCTCACATTCAGGAGACCGCCCACATGCCTGCCCAGACTGTGGAAAAACCTTTGTTGAGAAGGGCAACATGCTTCGTCACCTGCGTAAACATGTGGCTGAAGGAGGGGGTGCAGGTGCAGCTCAGCCACAGCCACCTCCACAGGGACATCACCAGAATCCTGCTGTGGCAGGACATGGAGTTGTGGTTCCAACTACACATCATCTCCAACACCATCCTCCGCCGCCGCCTCTACAGCCGCATCCCACACATACTGCTGTGGTTGTTCCCACGCCTAATGGAGTTCTGACTTCATTCTGA
Protein Sequence: MMNAEQHTLTVPASSAAPPDEATHPGALQRHTGTPADLRVGTAVALSSVAKYWVLTNLFPGPIPQVSVYGLHPPRPCDSGKPGGGQEGLPQQQQQQHCLTGPPGIGVTETMALVPHHPQHTHPQQIPVTAVQAALTTTAGGVTTLSIPPQQHLEVAGAGGATATVMLTSEEVDKDKLDKGTCTTERCGENQVHCQVQCDLQLVNAAAVAAQTQQQANEQLAAQQQQQQQQQHQQQQQQQQQQHQAMATQLTQQQLQQLNQQQAAAAHQVALSQQHQQQQQQQQQQQQHQHQQQQQPGAAGDGTGPIANGAANNVMQAPVPAPSSSQEVGTQMDPAGVPPVGPDQHQVKDEVKPTISGCAKDIRNLPMPGFPVQDIKSHMMDIRTADGSIVKISTPGNGDQELTKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQNEMAVAAGTVTAGAVLQSPGGVKSSCSEVGGAGGSNTATASTATSPATTAVITAPGTHICDICSKIFPFRYQLIVHRRYHTERKPFTCQVCGKAFTCAAELSRHGKCHLGGSMYTCAVCFHVFANAASLERHMKRHATDKPYGCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHACQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLINHVRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGDSPHRCEFCSKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRCHTGERPFSCSECGKAFPLKGNLLFHQRSHNKGAAAERPFRCDLCPKDFMCKGHLVSHRRSHSGDRPHACPDCGKTFVEKGNMLRHLRKHVAEGGGAGAAQPQPPPQGHHQNPAVAGHGVVVPTTHHLQHHPPPPPLQPHPTHTAVVVPTPNGVLTSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00210017;
90% Identity: iTF_01567172;
80% Identity: -