Basic Information

Insect: Zeugodacus cucurbitae
Gene Symbol: lolal_1
Assembly: GCA_028554725.2
Location: CM053023.1:50968625-51013825[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 4.6 8e+03 -2.3 0.5 16 24 482 490 481 491 0.86

2 5 9.3e-11 1.6e-07 32.0 0.0 1 38 602 640 602 645 0.89

3 5 2.9e-13 5e-10 40.0 0.0 2 39 657 694 656 697 0.94

4 5 3.4e-17 6e-14 52.5 0.0 1 45 711 756 711 756 0.98

5 5 9.6e-19 1.7e-15 57.5 0.0 1 43 763 806 763 808 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	4.6	8e+03	-2.3	0.5	16	24	482	490	481	491	0.86
2	5	9.3e-11	1.6e-07	32.0	0.0	1	38	602	640	602	645	0.89
3	5	2.9e-13	5e-10	40.0	0.0	2	39	657	694	656	697	0.94
4	5	3.4e-17	6e-14	52.5	0.0	1	45	711	756	711	756	0.98
5	5	9.6e-19	1.7e-15	57.5	0.0	1	43	763	806	763	808	0.96

Sequence Information

Coding Sequence: ATGGCATCAAGAAGTCACCAGTATTTTAGTTTGCGTTGGAACAATTACCAAAACACCATGACTTCGGTGTTCCAGCAATTACGTGAAGATTTATCTTTTGTGGATGTGACCCTTTCCTGTGAGCATGGTTCGCTTAAAGCACATAaggTTGTTTTATCCGCCTGCTcatcatattttcaaaaactactTTTGGAAAATCCCTGCAAACATCCCACTATCATACTTCCGGGCGATATTATATTCACAGACTTGAAGACCATTATTGATTTCGTTTATCGCGGAGAAATTGATGTTACCGAATCTGAATTACAGGGTTTATTACGTACAGCCGAACAGCTTAAAATCAAGGGACTTTGTGAGACAGCCGAAAATACAGACGATCTAAACGATTCGGCTACAGCTACAATCACCGTATCGGAGAATATACAGCAAGCCGTTGTTGGTAATATCGTGAATGCTACAGTAGCAACGGGTCAACTCTCACCCAATATACCACATCAatcgcaacagcagcaacaacaacagatcaCCACTAATACGGCAGTGCTCACGCATAATATTGGCAACGTGACTACAGCAAATACACAACAAATTGGATCTGCCACAGCGAATGTCACTGGACAGTTAGTTAGTGCGGGCACTGcggtacaacagcaacaacttggACGTAAATCTCGTGTACGTAAGCGTTCCAAGTCACCAGATATACAACATCAAGTACAGAGTACACAACATCCACAAACTATTTTAATACAGAATCAAAATCAAGCCGCTATCGTTAGTTTACAACAGACGTCATCTGGTAATTATATACCGGTATCCGGTGTACAAACGGTTAGCACTAGCGGTGTTGGGCAACAGCAGACGGTAATCACTGGTGACGATTCGGATACGGATAAACCGTCGAAAATCTGTAAGACAGAAACAGCGTCAGCGTCACCGACGTCCAGCGTATCTGGTGTATCGGGCACGAATAATGCTGGAAGCGTAACGACAGTTGCAGCACCAGGTACAGCGATTGTTACGCAGATTGTAGTCGCACGAGACGGCAAAGATAAAAATATGACTAGTTTAGGAATGGGAATGaatGGCGGAATTCTTGGAGTGCCAATGGGCTTTTTAGATTTTGCACCAGAACCACCAGCACCATCAGCCACACCTGTAACAGTAACGGAACATGTCGATTTATCATGTAATCCTAATACCGACACTCGAGATTTATCAAACCCCACCGAAGCACTGGATATCGACAATCATTTAGCCCAACACATGATACAACGGCTTGATCAATCTCCGATGCATGCTATACATCATCAGACCGGCGATGAAAGTAATTCGAATTTAGTGCAGCATATTAAGAGTGAGGTGATTGATgcgaaacagcaacaacaagtgcagcaacagcaacatcaccaacagcaacaacatcaattgCATGCTCAACAACTCTCACAAAATCaagcacagcaacagcaacatcaacagcatCAAGTACACCAACAAACAGCACACTCACATACAACACACGTCCAACAGCAAGCACAATCACATCAGGATCTAACCGGAGCAACAGTAATGGAAATCGATCCAAGCCAAATAAAACATGAACCGGGAATGATCATAACACCGGAAATCGTTAATATGATGACAACTGGGCATATGGATATGTACAATTCTGATACAAGTGAGGATTCAATGATGATAGCAAATGGCTCACCAAATGATCAAACTGAGCCACATTACACTAATTTGGACCAACAGCATGTGGATGGTAAAGGTCAGTTTAATGGTCCCAAAACTTGGACTCAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAATATGAGTCTTACAAAAGCATCAGTTACATATGGTATACCATCGACAACTTTATGGCAACGTGCCCATCGTATGGGCATTGAAACGCCAAAGAAGGAGGGTGGTACGAAATCATGGAATGAGGATTCTTTAAATAATGCTTTAGAAGCCCTACGTTCTGGGCAAATATCAGCAAATAAAGCGTCCAAAGCCTTTGGTATACCATCGTCGACTTTGTATAAAATAGCGCGACGTGAAGGTATTCGTTTGGCAGCACCATTTAATGCGGCACCAACAACGTGGACACCAGAAGATTTAGAGCGTGCATTGGAAGCAATACGTGCTGGTCATACGTCCGTACAGAAGGCCAGCGCTGAATTTGGCATACCAACGGGCACCTTATACGGCCGTTGCAAGCGCGAAGGTATTGAGTTATCACGTTCGAATCCCACACCATGGTCGGAAGACGCAATGAATGAAGCTCTGAATTCAGTACGAATTGGCCAGATGTCTATTAACCAGGCCGCAATTCATTACAACCTTCCCTACAGCTCTTTGTATGGTCGCTTTAAGCGTGGAAAATATGACGTTACTAATACCAGTAGCACCTCCATTAATAATGCATCAGGAAATACTTCGGGAAGCATCGAAATTATCGAACATAGTCAAGAAAACTCGTTACATATATTTCAGCAACAGTTCCAGTATAGTCCGTCGCCACACCAACAACCTCAGCATGGCGGTCAAACTCAATCACAGACACCTCAACATTTAACTCAGCATGTTGTACACATTCAACAACCACAGACtcatcatcagcagcaacaagtACAtgctcaacaacagcaacatatcCAGCAGCAACAAGATGTTGTAACATCCAGCAGCCAGGTGGCACACAGCAGTGCAGGTGCTggtcaacagcagcaacaacaaattcaacaGATCTATCATCATCACAGCACGCCGGAAAGAAGTTGA
Protein Sequence: MASRSHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSSYFQKLLLENPCKHPTIILPGDIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENTDDLNDSATATITVSENIQQAVVGNIVNATVATGQLSPNIPHQSQQQQQQQITTNTAVLTHNIGNVTTANTQQIGSATANVTGQLVSAGTAVQQQQLGRKSRVRKRSKSPDIQHQVQSTQHPQTILIQNQNQAAIVSLQQTSSGNYIPVSGVQTVSTSGVGQQQTVITGDDSDTDKPSKICKTETASASPTSSVSGVSGTNNAGSVTTVAAPGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPNTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHAIHHQTGDESNSNLVQHIKSEVIDAKQQQQVQQQQHHQQQQHQLHAQQLSQNQAQQQQHQQHQVHQQTAHSHTTHVQQQAQSHQDLTGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDQTEPHYTNLDQQHVDGKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVTNTSSTSINNASGNTSGSIEIIEHSQENSLHIFQQQFQYSPSPHQQPQHGGQTQSQTPQHLTQHVVHIQQPQTHHQQQQVHAQQQQHIQQQQDVVTSSSQVAHSSAGAGQQQQQQIQQIYHHHSTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00979276;
90% Identity: iTF_00192007;
80% Identity: iTF_01563014;