Zalb012806.1
Basic Information
- Insect
- Zele albiditarsus
- Gene Symbol
- -
- Assembly
- GCA_958496275.1
- Location
- OY292415.1:7763104-7765965[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.01 0.87 10.1 0.6 1 21 6 27 6 28 0.88 2 14 0.23 20 5.8 0.0 2 20 34 52 33 54 0.93 3 14 4.8 4.1e+02 1.7 0.3 1 12 230 241 230 250 0.81 4 14 0.021 1.8 9.1 1.0 1 20 372 391 372 393 0.95 5 14 0.0001 0.0089 16.4 0.2 2 23 398 419 397 419 0.98 6 14 2.7e-05 0.0024 18.2 3.5 1 23 431 453 431 453 0.98 7 14 0.032 2.8 8.5 1.2 1 23 472 493 472 493 0.83 8 14 0.002 0.17 12.3 0.0 2 23 499 520 498 520 0.95 9 14 4.1e-05 0.0035 17.6 4.8 1 23 585 607 585 607 0.99 10 14 1.8e-06 0.00015 21.9 3.7 1 23 613 635 613 635 0.96 11 14 9.5e-05 0.0081 16.5 5.3 1 23 641 663 641 663 0.98 12 14 1.2e-06 0.00011 22.4 0.8 1 23 669 691 669 691 0.98 13 14 7.9e-05 0.0068 16.7 0.2 1 23 695 717 695 717 0.99 14 14 4.1e-05 0.0035 17.6 0.1 1 23 725 747 725 747 0.98
Sequence Information
- Coding Sequence
- atgggTTCATCGACTTTTATGTGTCCCCTGTGTTGTGGCAAAGCTTTTGACGATTCacaatcattgaaatatcatttattaagtttaactgataatttatattgtccCGGATGTTCACAAAGATCGGATTCAGTTAGTGCATTAATTCAACATCTTGATGAATGCGGTCAAGATCATCAAAATGGCACCGAAAATTTTAAAGTTTCTAACAACGAAGTattaatggATACtaatgttgaagaaattaatgaaaatttcttgGCAACAGTCGACAATCGGGGAATTATGATTGTTGGTGGTGGTCCACGAACGATAGAAGTGGATGAAAAcggCGAAATAAAAGTTATTCAGCGAATGGATATATCAGAAAATTTTTCCGAGAACGATAATTCAACTTGTGGTTCAAATCGACCCGATAGTGGTATGAAAGTTGAAAGTTTTCACACTGAAGAACGAGATTTAGAATCAACACCAGTAATAAGTATTCCCGAATCATCAATGGACGATCCATTAGACGATGATAAAGTAATAGCAATGTTGCCAGACGATTCACCAAATTTTCTTGAGACTgacgataatttaattgaaataaaacatcgTGACGAAGAAATTGACGCAGAGGAATTGATGAAAGTGAAACAGGAGCTGTGCGAGGTAAACGAGAACGAGGTGGATTCTTCAGCGGTTTACAATTGCAGTAGTTGCAGTATGAGTTTCAATTCCGTACTCGAACACATAAAAATGTATCACGATGGTCAAGAAGTTGTATTGGAAATGGCAGACGAGATTGCAGAAGAGGAACCATTACAGGAAGAACCACAGTTACCGGAGCAACAATTATCACCACCGACCACACCACAATCTGACGCTCAAGGACCACTAACACGCGCTCGACAACGACAAACAATGAATACATTACGTACTGAAGAGTGTATCGACGCTGAAGGTCGTCTTTACACCCGTAAAGTCGTGCAAATTGAACGTTTTTGGGATCGATGTGCGTCCAACAATTCATCACAAACGACAAAATCAGCGccaatgattgaaaaatttttttccaacgctGAAGGAATAAAAACACGAACGCGCAGTGAAACAACACCACAACGAATGTATCGTTGTAATCAGTGTTTAGAACAATTTCCACGCTTAGGTGAATTTAGAACTCATGTGTGTCTAAATGGTAATAATCAGTGTGAAAATTGTGAACAGGCATTTGCAACAGCTAAAGCATTACAATTGCATGTTAAAACGCACGATATTGATGGACAAATTGAAggccaaaaattatttacatgtaAAGTGTGCGGTACAGAATTTTCAACGCACAAAAGTTTACGTTTACATTCGCGTATGCATGCACCAGTACGTGCACGACATGTTGATGCACCTGAAGGTACCACTGATTCACGTTTTACATGTCACGAATGTGGTAAAAGTCTTTCGGAATTTTATCGCGCGGCACACATGTCATTGCACGCTGGTGATTCAGTAACGTGCGCTGTTTGCAATCGTAAATTTGATTCCGCTGACAGTTTAGCAATGCATGCGGCAGTGCATCCCGAATTGGGTGTgcaaaataatcaaatgttacaactgcaacaacaacaacaacaacaaccacagCAAACTCAACAACAGCAATTGACGAATAGTcgaccatcaccatcaccaacaCCACCCGGGACCATTAATTCAGGTGCAAGTGCTACAACTACAAATGATAATGACACGGGCGATCTTACAAAACCTTATCAGTGTCAGCATTGTGGAAGAAGGTTTACTAGACCACATGAAAAAGTTAAACACGAGCGAATTCATACGGGTGAAAAACCGCATGCTTGTGAGgTTTGTGGCAAGACATTCAGAGTTTCGTATTGTTTAACGCTTCATATGAGAACGCATACGGGTGTGCGACCATATCAGTGTCAACATTGTGGTAAACGATTCAAAGCATCATCGGtttataatcatcatttattaaCGCATGGTGATGAACGTGCTTATACGTGTCCATACTGTCCAAAAACATTTAAAACACGTGTGCAATTAGCTGGACATAAAAATAGTCATACAAAACCGTTTCGTTGTACCGAATGTTCACGACCATTTGCATCACTTTATGCAGCGCGTGCTCACATACAAACGCATAAAAAagacaataatttaaaattcagtTGTAATATTTGTGGTGCATCGTATGGACGTGCTTTTGCATTAAAAGATCATTTGAAAGTGCATGGTCCAGATGTGTTGATGCCACCTGAACCCGCGCGTGAAGAAGAAGTTCATGAAGACTTTTTGCTTGAGGAAGATGAAATATTAGAGGAGGAATTGGTTAATGCAGGCATTCAAATTACCGTTGGCGATGTTGAGTGA
- Protein Sequence
- MGSSTFMCPLCCGKAFDDSQSLKYHLLSLTDNLYCPGCSQRSDSVSALIQHLDECGQDHQNGTENFKVSNNEVLMDTNVEEINENFLATVDNRGIMIVGGGPRTIEVDENGEIKVIQRMDISENFSENDNSTCGSNRPDSGMKVESFHTEERDLESTPVISIPESSMDDPLDDDKVIAMLPDDSPNFLETDDNLIEIKHRDEEIDAEELMKVKQELCEVNENEVDSSAVYNCSSCSMSFNSVLEHIKMYHDGQEVVLEMADEIAEEEPLQEEPQLPEQQLSPPTTPQSDAQGPLTRARQRQTMNTLRTEECIDAEGRLYTRKVVQIERFWDRCASNNSSQTTKSAPMIEKFFSNAEGIKTRTRSETTPQRMYRCNQCLEQFPRLGEFRTHVCLNGNNQCENCEQAFATAKALQLHVKTHDIDGQIEGQKLFTCKVCGTEFSTHKSLRLHSRMHAPVRARHVDAPEGTTDSRFTCHECGKSLSEFYRAAHMSLHAGDSVTCAVCNRKFDSADSLAMHAAVHPELGVQNNQMLQLQQQQQQQPQQTQQQQLTNSRPSPSPTPPGTINSGASATTTNDNDTGDLTKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYQCQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCNICGASYGRAFALKDHLKVHGPDVLMPPEPAREEEVHEDFLLEEDEILEEELVNAGIQITVGDVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00996534;
- 90% Identity
- iTF_00997216;
- 80% Identity
- -