Mcin000987.1
Basic Information
- Insect
- Meteorus cinctellus
- Gene Symbol
- -
- Assembly
- GCA_030523045.1
- Location
- JAPYZF010000015.1:580969-583784[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.01 0.87 10.1 0.6 1 21 6 27 6 28 0.88 2 14 0.23 20 5.8 0.0 2 20 34 52 33 54 0.93 3 14 4.8 4.2e+02 1.7 0.3 1 12 227 238 227 247 0.81 4 14 0.021 1.8 9.1 1.0 1 20 369 388 369 390 0.95 5 14 0.00011 0.0096 16.3 0.9 2 23 395 416 394 416 0.98 6 14 1.9e-05 0.0016 18.7 3.4 1 23 428 450 428 450 0.99 7 14 0.032 2.8 8.5 1.2 1 23 469 490 469 490 0.83 8 14 0.002 0.17 12.3 0.0 2 23 496 517 495 517 0.95 9 14 4.1e-05 0.0035 17.6 4.8 1 23 581 603 581 603 0.99 10 14 1.8e-06 0.00015 21.9 3.7 1 23 609 631 609 631 0.96 11 14 9.5e-05 0.0081 16.5 5.3 1 23 637 659 637 659 0.98 12 14 1.2e-06 0.00011 22.4 0.8 1 23 665 687 665 687 0.98 13 14 7.9e-05 0.0068 16.7 0.2 1 23 691 713 691 713 0.99 14 14 4.1e-05 0.0035 17.6 0.1 1 23 721 743 721 743 0.98
Sequence Information
- Coding Sequence
- atgggTACATCGACTTTTATGTGCCCGTTGTGTTGTGGCAAAGCTTTTGACGATTcacaatcattgaaatatcatttacTAAGTTTAACTGACAATTTATATTGCCCTGGATGTTCGCAAAGATCAGATTCAGTTAGTGCATTAATTCAGCATCTTGATGAATGCGGTCAGGATCATCAAAAtggcaatgaaaatttcaaagttACTAACAACGAAGTATTAATGGATACCAATGTcgaagaaattaatgaaaatttcctcGCAACAGTCGACAATCGCGGAATTATGATTGTTGGCGGTCCACGAACTATAGAAGTAGACGAAGATGGCGAAATAAAAGTTATTCAGAGAATGGATTTGTCCGAAAACTTTTCAGAGAATGACAATTCCACTTGTGGTTCAAATCGACCTGATAGCGTTATGAAAGATGGAAGATATTCTGAAGACGGAGATTTGGAATCAACACCAGTTATAAGTATTCCCGAATCATCATTAGACGCATTAGACGACGACAAAGTAATAGCAATGTTGCCAGACGATTCGACAAATTTCCTTGAGACTGATGACAATTTAATCGAAATAAAACATCGTGATGAAGAAATTGGCGCTGAGGAATTGATGAAAGTGAAACAAGAGCTGTGCGAGGTAAACGAGGACGAGGTGGATTCTTCGGCCGTGTATAATTGCAGCAGTTGCAGCATGAGTTTCAATTCTGTACTAGACCACATAAAAATGTATCACGATGGTCAGGAAGTAGTGTTAGAGATGGCAGATGAAATTGCAGAAGAGGAACAAGAGCAACAAGAAGAATTACAGTTACCGGAACAACCATCTCCACCACCAACACCAAAAACCGACGCCCAAGGACCTCTAACACGGGCACGACAACGACAAACAATGAATACACTACGTACTGAAGAATGCATCGACGCAGAAGGTCGTTTGTACACACGTAAAGTCGTTCAAATCGAACGTTTTTGGGATCGTGGTGGATCAAATACTCCGACACAAACTGCAAAATCCGTACCAatgattgagaaatttttctctAACGCTGACGGAATTAAAACACGAACTCGGAGTGAAACAACACCTCAACGAATGTATCGCTGCAATCAGTGCTTAGAACAGTTTCCACGTTTAGGTGAATTTAGAACTCATGTGTGTCTAAATGGTAACAATCAGTGTGAACATTGTGAGCAGGCATTTGCAACAGCGAAAGCACTGCAATTGCATACTAAATCTCACGAAATTGATGGAACGAATGAAggacaaaaattatatacatgcaaAGTTTGCGGTACAGAATTTTCAACACACAAAAGTTTACGTTTACATTCGCGTATGCATGCGCCAGTACGTGCACGACATGTTGATGCACCCGAAGGTACGAATGATTCACGCTTCACATGTCACGAATGTGGTAAAAGTCTCTCAGAATTTTATCGCGCTGCACACATGTCATTGCATGCTGGAGATACAGTGACATGCGCTGTTTGCAATCGCAAATTTGATTCTGCTGATAGTTTAGCGATGCATGCAGCGGTGCATCCCGAGTTGGGTGttcaaaataatcatattGTGCAACATCAGCAACAAACGCAGCTGCAACAAACCCAACAACATTCGCAATTGACGACTAGTCGACCGTCACCCTCGCCAACTCCGCCCGCAACTATTAATTCAGGTACTAGTGCTACAACAACCACTGAAAATGATATTGGCGATATTACCAAACCTTATCAGTGTCAACACTGCGGTAGGAGGTTCACTAGACCACATGAGAAAGTTAAACACGAAAGAATCCATACGGGGGAAAAACCGCACGCTTGTGAGgtTTGTGGTAAGACATTTCGAGTCTCTTATTGTCTAACCCTTCACATGAGAACGCACACAGGTGTGAGACCATATCAGTGTCAACATTGCGGCAAAAGATTCAAAGCTTCATCGGTTTacaatcatcatttattaacGCATGGTGATGAACGTGCTTACACATGTCCGTATTGTCCAAAAACATTTAAAACACGTGTACAATTGGCCGGACACAAAAATAGTCATACAAAACCGTTCCGTTGTACCGAGTGTTCACGACCATTCGCATCGCTTTATGCAGCGCGCGCGCACATACAAACGCACAAAAaggataataatttaaaattcagtTGTAATATTTGCGGTGCATCGTACGGACGGGCGTTCGCATTGAAAGATCATTTGAAAGTGCACGGTTCAGATGTGTTGATGCCACCTGAACCAGCGCGAGAAGAAGAAGTTCATGAAGACTTTTTGCTCAAGGAGGACGAAATTTTAGAAGAGGAATTGGTGAATGCAGGCATCCAAATTACCGTTGGAGATgctgaatga
- Protein Sequence
- MGTSTFMCPLCCGKAFDDSQSLKYHLLSLTDNLYCPGCSQRSDSVSALIQHLDECGQDHQNGNENFKVTNNEVLMDTNVEEINENFLATVDNRGIMIVGGPRTIEVDEDGEIKVIQRMDLSENFSENDNSTCGSNRPDSVMKDGRYSEDGDLESTPVISIPESSLDALDDDKVIAMLPDDSTNFLETDDNLIEIKHRDEEIGAEELMKVKQELCEVNEDEVDSSAVYNCSSCSMSFNSVLDHIKMYHDGQEVVLEMADEIAEEEQEQQEELQLPEQPSPPPTPKTDAQGPLTRARQRQTMNTLRTEECIDAEGRLYTRKVVQIERFWDRGGSNTPTQTAKSVPMIEKFFSNADGIKTRTRSETTPQRMYRCNQCLEQFPRLGEFRTHVCLNGNNQCEHCEQAFATAKALQLHTKSHEIDGTNEGQKLYTCKVCGTEFSTHKSLRLHSRMHAPVRARHVDAPEGTNDSRFTCHECGKSLSEFYRAAHMSLHAGDTVTCAVCNRKFDSADSLAMHAAVHPELGVQNNHIVQHQQQTQLQQTQQHSQLTTSRPSPSPTPPATINSGTSATTTTENDIGDITKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYQCQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCNICGASYGRAFALKDHLKVHGSDVLMPPEPAREEEVHEDFLLKEDEILEEELVNAGIQITVGDAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01560627; iTF_00997216;
- 90% Identity
- iTF_00997216;
- 80% Identity
- -