Mcol002571.1
Basic Information
- Insect
- Meteorus colon
- Gene Symbol
- -
- Assembly
- GCA_030523125.1
- Location
- JAPYZG010000225.1:16233-19045[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0096 0.89 10.1 0.6 1 21 6 27 6 28 0.88 2 14 0.16 15 6.3 0.0 2 20 34 52 33 54 0.93 3 14 4.6 4.3e+02 1.7 0.3 1 12 225 236 225 245 0.81 4 14 0.02 1.8 9.1 1.0 1 20 367 386 367 388 0.95 5 14 0.0001 0.0098 16.3 0.9 2 23 393 414 392 414 0.98 6 14 1.8e-05 0.0016 18.7 3.4 1 23 426 448 426 448 0.99 7 14 0.03 2.8 8.5 1.2 1 23 467 488 467 488 0.83 8 14 0.0019 0.18 12.3 0.0 2 23 494 515 493 515 0.95 9 14 3.9e-05 0.0036 17.6 4.8 1 23 575 597 575 597 0.99 10 14 1.7e-06 0.00016 21.9 3.7 1 23 603 625 603 625 0.96 11 14 8.9e-05 0.0083 16.5 5.3 1 23 631 653 631 653 0.98 12 14 1.2e-06 0.00011 22.4 0.8 1 23 659 681 659 681 0.98 13 14 7.4e-05 0.0069 16.8 0.2 1 23 685 707 685 707 0.99 14 14 3.9e-05 0.0036 17.6 0.1 1 23 715 737 715 737 0.98
Sequence Information
- Coding Sequence
- atgggTACATCGACTTTTATGTGCCCGTTGTGTTGTGGCAAAGCTTTTGACGACTCacaatcattgaaatatcatttacTAAGTTTAACCGATAATTTATATTGCCCTGGATGTTCGCAAAGATCAGATTCAGTTAGTGCATTAATTCACCATCTTGATGAATGCGGTCAGGATCATCAAAATGGCACTGGAAATTTCAAAGTTACTAACAACGAAGTATTAATGGATACCAATGTcgaagaaattaatgaaaattttctcgcAACAGTCGACAATCGCGGAATTATGATTGTTGGCGGTCCACGAACTATAGAAGTAGACGAAGATGgcgaaataaaagttattcaGAGAATGGATTTGTCGGAAAACTATTCAGAGAATGATAATTCTACTTGTGGTTCAAATCGACCTGATAGCGTTATGAAAGATGGAAGATATCATTCTGAAGACGGAGATTTGGAGTCAACACCAGTTATAAGTATTCCCGAATCATCATTAGACGACGATAAAGTAATAGCAATGTTGCCAGACGATTCGTCAAATTTCCTTGAGACTGATGACAATTTAATCGAAATAAAACATCGTGATGAAGAAATTGGCGCGGAGGAATTAATGAAAGTGAAACAGGAGCTGTGCGAGGTAAACGAGGACGAGGTGGATTCTTCAGCCGTGTATAATTGCAGCAGTTGCAGCATGAGTTTCAATTCTGTACTAGATCACATAAAAATGTATCACGATGGTCAAGAAGTAGTGTTAGAGATGGCAGATGAAATTGCAGAAGAGAAACAAGAGCAACAAGAAGAATTACAGCTACCGGAACAACAATCTCCACCACCCACTCCAAAAACCGACGCTCAAGGACCACTAACACGCGCACGACAACGACAAACAATGAATACACTACGTACTGAAGAATGCATCGACGCAGAAGGTCGTTTGTACACACGTAAAGTCGTTCAAATCGAACGTTTTTGGGATCGTGGTGGATCAAATACTCCAACACAAACTGCAAAATCCGTGCCAatgattgagaaatttttttctaacgCCGACGGAATTAAAACACGAACTCGGAGTGAAACAACACCTCAACGAATGTATCGCTGCAATCAGTGTTTAGAACAGTTTCCACGTTTAGGTGAATTTAGAACTCATGTGTGTCTAAATGGTAACAATCAGTGTGAACATTGTGAGCAGGCATTTGCAACTGCGAAAGCATTGCAATTGCATACTAAATCTCACGAAATTGATGGAACAAATGAAggacaaaaattatatacatgcaaAGTTTGCGGTACAGAATTTTCAACGCATAAAAGTTTACGTTTACATTCGCGTATGCACGCGCCAGTACGTGCACGACATGTTGACGCACCCGAAGGTACGAATGATTCACGCTTCACATGTCACGAATGCGGTAAAAGTCTCTCAGAATTTTATCGTGCTGCACACATGTCATTGCATGCTGGAGATACAGTAACGTGCGCTGTTTGCAATCGCAAATTTGATTCTGCTGATAGTTTAGCGATGCATGCGGCGGTGCATCCCGAGTTGGGTGttcaaaataatcaaattgtgcaacatcaacaacaaacTCAACAACAGCATTCACAATTGACAACTAGTCGACCGTCACCCTCGCCAACTCCGCCCGCTACTATTAATTCAGGTACTAGTGCTACAACAACAACTGAAAATGACATTGGCGATACTACCAAACCTTATCAGTGTCAACACTGCGGCAGGAGGTTCACTAGACCACATGAGAAAGTTAAACACGAAAGAATCCATACGGGGGAAAAACCGCACGCTTGTGAGgtTTGTGGCAAGACATTTCGAGTCTCGTATTGTCTAACTCTCCACATGAGAACGCACACAGGTGTGAGACCATATCAGTGTCAACATTGCGGCAAAAGATTCAAAGCTTCATCGGTTTacaatcatcatttattaacGCATGGTGACGAACGTGCTTACACATGCCCGTATTGCCCAAAAACATTCAAAACACGTGTACAATTGGCCGGACACAAAAATAGTCATACAAAACCGTTCCGTTGTACCGAGTGTTCACGACCATTCGCATCGCTTTATGCAGCGCGCGCGCACATACAAACGCACAAAAAagacaataatttaaaattcagtTGTAATATCTGCGGTGCATCGTACGGACGGGCGTTCGCATTGAAAGATCATTTGAAAGTGCACGGTTCAGATGTGTTGATGCCACCTGAACCAGCGCGTGAAGAAGAAGTTCATGAAGACTTTCTGCTCAAGGAGGACGAAATTTTAGAAGAGGAATTGGTGAATGCAGGCATCCAAATTACCGTTGGAGATgctgaatga
- Protein Sequence
- MGTSTFMCPLCCGKAFDDSQSLKYHLLSLTDNLYCPGCSQRSDSVSALIHHLDECGQDHQNGTGNFKVTNNEVLMDTNVEEINENFLATVDNRGIMIVGGPRTIEVDEDGEIKVIQRMDLSENYSENDNSTCGSNRPDSVMKDGRYHSEDGDLESTPVISIPESSLDDDKVIAMLPDDSSNFLETDDNLIEIKHRDEEIGAEELMKVKQELCEVNEDEVDSSAVYNCSSCSMSFNSVLDHIKMYHDGQEVVLEMADEIAEEKQEQQEELQLPEQQSPPPTPKTDAQGPLTRARQRQTMNTLRTEECIDAEGRLYTRKVVQIERFWDRGGSNTPTQTAKSVPMIEKFFSNADGIKTRTRSETTPQRMYRCNQCLEQFPRLGEFRTHVCLNGNNQCEHCEQAFATAKALQLHTKSHEIDGTNEGQKLYTCKVCGTEFSTHKSLRLHSRMHAPVRARHVDAPEGTNDSRFTCHECGKSLSEFYRAAHMSLHAGDTVTCAVCNRKFDSADSLAMHAAVHPELGVQNNQIVQHQQQTQQQHSQLTTSRPSPSPTPPATINSGTSATTTTENDIGDTTKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYQCQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCNICGASYGRAFALKDHLKVHGSDVLMPPEPAREEEVHEDFLLKEDEILEEELVNAGIQITVGDAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00996534;
- 90% Identity
- iTF_00996534; iTF_01560627;
- 80% Identity
- -