Zvit001732.1
Basic Information
- Insect
- Zaprionus vittiger
- Gene Symbol
- Hr39
- Assembly
- GCA_018904025.1
- Location
- JAEIFQ010001099.1:10105868-10109722[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.092 4.9e+02 -0.3 1.2 154 176 36 58 3 123 0.44 2 3 0.076 4.1e+02 -0.0 0.4 52 110 196 254 172 312 0.74 3 3 2.8e-83 1.5e-79 268.2 4.8 85 408 406 694 379 694 0.88
Sequence Information
- Coding Sequence
- ATGCCCAACATGTCCAGCATCAAGACGGAGCAGGGCGTCTCCCCTGGCGGCAGCAGCAGCAGCGGCAGTTACCACCAGTTGCCGGTGAACATGTCCAGCACGATGACCTCGACGAGCAGCTCCACGACCACAAGCCGTCACAATGTGTCCGTGACGAACATCAAGTGCGAGCTGGAGGATCAGTTGCCGCAGACGCCCAATGGGAATCATCTGGTGCCTGTGATAGCCAGCTACGCTACGCATCCCCACAACAATCACAGTAGCAGCAATCACATTAATCACAACAATCACAGCAGCAGCAGCCTGCGTATACCGCTAGGCAGGGGCGGAGGCGGTCAGGAGGAGGATGATGAGTCCGACTCAGAGGCGGAGCTGGCGAATATTGAGAATCAAAAGGTGCGCAGACGTGGCACAGATAAGAACGGACCGCGTCCCATTGATCCCATCAATCTGAAGTATGAACCCGCTGTCGGCGTCGGCGTTTGCGATCGCAGCAAATCCTCAAGCGGTGGCCACCTCCCACTGTTGCCCGCCAATCCGAGTCCAGATTCTGCCATACATTCCGTCTACACGCACAGCAGCCCATCGCAATCGCCACTGACGTCACGCCACGCCCCCTACACACCATCGCTGAGTCGGAACAACAGCGACGCATCGCACAGCAGCTGCTACAGCTATAGCTCTGAGTTCAGTCCCACCCACTCACCCATCCAGGCACGTCATGCCCCACCCGCCGGTTCAGCACTGTTTCCTGGCGGCAGCGCAGCCGGCAATGGATTGCTCTACAGACCGCTCAATGTAGATGCTGCTGCCGCAGCGGCGCAGGAGGCGCAAAATCTCAGCATGGATGGAAGCGGTGCAGGTGCTGGCTCCAACCAACTGGATGCCACAGCTGCACTGCCTGCCTCGCCAGCGGGCATCTCACGGCAACAGCTCATCAATTCACCATGCCCCATTTGTGGTGATAAGATCAGTGGCTTCCATTACGGCATCTTCTCCTGCGAATCGTGCAAGGGCTTCTTCAAGCGCACCGTACAGAATCGCAAGAACTATGTGTGCGTACGTGGAGGTCCCTGTCAGGTGAGCATCTCCACGCGCAAGAAGTGTCCCGCCTGCCGCTTCGAGAAGTGCCTGCAGAAGGGCATGAAACTGGAGGCCATACGAGAGGATCGCACACGTGGCGCGAGTCCCAGTCTGGGTGCATCCATTAAAACGGAACAGACAGAGCCGCTAAATCATCACGCGTCGCGTGCCTCAAGCATTCCAGCCCTGCTGCAGGAAATCATGGATGTTGAACATCTCTGGCAATACACAGATGCGGAGCTGGCACGCATCAATCAACCTTTGTCCTCATTTGCCAGCGGCGGCGGCTCCACGTCGGGCTCTACGGCGGGCAATGCAACGGGTGCGGGTGGCACAGCTGGTGCCAGTGCCCAACAGATGACCAATCCACTGCTGGCCAGTGCGGGTCTCTCATCCAATGGGGAGAATGCCAATCCTGATCTGATTGCCCATCTCTGCAACGTGGCCGATCATCGACTGTACAAGATTGTCAAATGGTGCAAGAGTTTGCCGCTCTTCAAGAACATCTCGATCGATGATCAGATCTGCCTGCTCATTAATTCATGGTGTGAGCTGTTGCTCTTCTCCTGCTGCTTTCGTTCCGTTGACACGCCTGGGGAGATCAAGATGTCGCAGGGTCGAAAGATCACGCTGGCACAAGCCAAAACCAATGGACTGCAGGCCTGCATTGAGCGCATGTTGAATCTGACCGATCATTTGAGACGTTTACGCGTTGATCGCTACGAATATGTTGCCATGAAGGTAATCGTGCTGCTGCAGTCTGACACCACAGAGCTGCACGAGGCGGTCAAGGTGCGCGAGTGCCAGGAGAAGGCGCTGCAGGGACTGCAGGCTTATACGCTGGCTCATTATCCCGATACGCCGTCCAAGTTTGGTGAGCTGCTGTTGCGCATACCCGATCTTCAGCGCACGTGTCAGTTGGGCAAGGAAATGTTAACGATCAAGACGCGCGATGGTGCCGACTTCAATTTGCTGATGGAGCTGCTACGCGGAGAACATTGA
- Protein Sequence
- MPNMSSIKTEQGVSPGGSSSSGSYHQLPVNMSSTMTSTSSSTTTSRHNVSVTNIKCELEDQLPQTPNGNHLVPVIASYATHPHNNHSSSNHINHNNHSSSSLRIPLGRGGGGQEEDDESDSEAELANIENQKVRRRGTDKNGPRPIDPINLKYEPAVGVGVCDRSKSSSGGHLPLLPANPSPDSAIHSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIQARHAPPAGSALFPGGSAAGNGLLYRPLNVDAAAAAAQEAQNLSMDGSGAGAGSNQLDATAALPASPAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCQVSISTRKKCPACRFEKCLQKGMKLEAIREDRTRGASPSLGASIKTEQTEPLNHHASRASSIPALLQEIMDVEHLWQYTDAELARINQPLSSFASGGGSTSGSTAGNATGAGGTAGASAQQMTNPLLASAGLSSNGENANPDLIAHLCNVADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSVDTPGEIKMSQGRKITLAQAKTNGLQACIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTTELHEAVKVRECQEKALQGLQAYTLAHYPDTPSKFGELLLRIPDLQRTCQLGKEMLTIKTRDGADFNLLMELLRGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01559808;
- 90% Identity
- iTF_01558327;
- 80% Identity
- iTF_01559808;